Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00592 ATGGGTAGTGGCAAAAACAGGTGGAAGATCTCCTTCCATCGAATTCCATCTGCTTTGAAACCTGAAAGTAAGCAACCCCCGACGGAATTCGTATGTCCGATTTCTGCCTCGTTAATGGCGGATCCGGTAATCGTTTCTTCAGGTCAGACATTCGAGCGGAACTGCGTTCAAGTTTGTAAAAAGCTGGGTTTTACGCCGGTCCTCTCTGACGGCTCGAAACCCGACTTTTCTACAGTAATCCCCAATATCGCCATTAAGTCGACTATTCTCAGCTGGTGTGATTCTTGTGGTGTCGAAAAGCCGAAACCCCTTGAATTTGGGGCGGCAGAGAAGTTCGTCTGTAAATTAATGGCTTCTCAAGAAGGAAAATCACATATCGAAAACAAGACAGAAGAAGGAAAGATAGAGGTTTCGGAGAAGGAGTTGCTCAAAGCGGTAGCGGAGAACCCTCCGGTGAAGTTTTCGTTTTCCGCGACTGAGGTGAATCGTCGACCGAGTCACTTCTACTCGAGCTCGGAAGAATCGGTGACGATGACGACTCCAACAACGCCTTTACCTCTTGCGACTCGGCCCTCTTGTTATTCTTCTTCGTCGTCGTCATCCGAGATCGTTGCAGACGAAACCTTACATCCCAATTCATCTGAAGAGGAGGGTATCGTCGTTAAGCTCAAGAGCTCTCAAGTATTCGAGCAAGAAGAAGCCGTCATCTCTCTGAGAAAGATCACGAGAACCAGGGAAGAAATTAGGGTTCCTCTATGTACTCCTCGTTTACTCTCCGCCCTCCGATCTCTACTGGTCTCCCGATACTCTGTTATTCAGATAAACGCGGTTGCAGCTTTGGTAAATCTCTCGCTAGAGAAGATCAACAAGGTAAAGATCGTACGGTCAGGTGTTGTTCCAGCGTTGGTCGATGTGTTAAAGGGAGGATTCCCTGAAGCTCAAGAGCACGCCGCCGGTGCTCTCTTCAGCTTAGCCCTGGCGGATGATAACAAAACGGCGCTGGGCGTGTTAGGTGCATTGTCTCCTCTCCTCCACATGCTCCGATCAGAGAGCGAGCGAGCTCGGCATGACTCGGCACTCGCTTTGTACCACCTCTCACACGTGCAGAGTAACCGTTCCAAACTCGTGAAACTGGGAGCTGTCCCGACACTGTTAGCTATGGCGAAATCAGGGGATTTGGCTAGCCGAACATTGCTCATACTGTGCAATATAGCAGCATGCGCCGATGGTCGAGCAGCGATGCTCGATGCTAACGCGGTTGAGTGTTTTGTTGGGATGTTAAAAGTGGGTGAGTTGGAATCGGAAGCAACTCGGGAGAATTGTGTCGTGGCATTATATGCACTGAGTCATGGGAGTTTGAGGTTTAAAGGGTTAGCGAAGCAGGCCGGAGCGGCTGAGGTGTTGAGGGAGGTGGAGGAGAGAGGAAGCGAGCGGGCGAGGGAGAAAGCAAAGAAAATCTTGGAGATGATGAGAGGGAGACATGAAAGAGGAGAAGAAGATGAGTTGGACTGGGAGAGCGTGTTGGAATCGGGAGTGGTGAGTAGGAGTCGTTATCGACTCGGTTGTGGAAAAAACGTGGCGGGTGCAAACTCGACGGAGTTTTGA 1605 0.5016 MGSGKNRWKISFHRIPSALKPESKQPPTEFVCPISASLMADPVIVSSGQTFERNCVQVCKKLGFTPVLSDGSKPDFSTVIPNIAIKSTILSWCDSCGVEKPKPLEFGAAEKFVCKLMASQEGKSHIENKTEEGKIEVSEKELLKAVAENPPVKFSFSATEVNRRPSHFYSSSEESVTMTTPTTPLPLATRPSCYSSSSSSSEIVADETLHPNSSEEEGIVVKLKSSQVFEQEEAVISLRKITRTREEIRVPLCTPRLLSALRSLLVSRYSVIQINAVAALVNLSLEKINKVKIVRSGVVPALVDVLKGGFPEAQEHAAGALFSLALADDNKTALGVLGALSPLLHMLRSESERARHDSALALYHLSHVQSNRSKLVKLGAVPTLLAMAKSGDLASRTLLILCNIAACADGRAAMLDANAVECFVGMLKVGELESEATRENCVVALYALSHGSLRFKGLAKQAGAAEVLREVEERGSERAREKAKKILEMMRGRHERGEEDELDWESVLESGVVSRSRYRLGCGKNVAGANSTEF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00592 534 Gene3D - 210 489 IPR011989 -
Eupl11g00592 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Eupl11g00592 534 SMART arm_5 368 406 IPR000225 GO:0005515
Eupl11g00592 534 SMART arm_5 327 367 IPR000225 GO:0005515
Eupl11g00592 534 SMART arm_5 245 285 IPR000225 GO:0005515
Eupl11g00592 534 SMART arm_5 286 326 IPR000225 GO:0005515
Eupl11g00592 534 SMART arm_5 407 450 IPR000225 GO:0005515
Eupl11g00592 534 FunFam RING-type E3 ubiquitin transferase 214 490 - -
Eupl11g00592 534 Pfam Armadillo/beta-catenin-like repeat 289 325 IPR000225 GO:0005515
Eupl11g00592 534 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Eupl11g00592 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Eupl11g00592 534 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Eupl11g00592 534 PANTHER U BOX DOMAIN-CONTAINING 23 493 - -
Eupl11g00592 534 Pfam U-box domain 27 94 IPR003613 GO:0004842|GO:0016567
Eupl11g00592 534 FunFam RING-type E3 ubiquitin transferase 8 100 - -
Eupl11g00592 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 98 IPR013083 -
Eupl11g00592 534 MobiDBLite consensus disorder prediction 172 194 - -
Eupl11g00592 534 SUPERFAMILY ARM repeat 222 490 IPR016024 -
Eupl11g00592 534 SUPERFAMILY RING/U-box 18 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00592 Eupl-Chr11 7510043 7512200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00592 26 534 U-box Gene Family AT5G65200 54.393 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00592 - - nnu:104607960 728.398