Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00583 ATGATCATCAACCAACCAACAATAAGGCTAATGATGTATCGTCAAGCTTCAATGCTCCATTGTTGCAGATTATGTTCTTCTTCTCCGTCTCGACTTCTCCCCCCCTTCAAATCTTCTTCTTCATTACAATCCTCAGCTGGACCCCTGTTTTGGCTAAAACCCTTGAGACAACGCAGACGAACCAGAGCATTCGGAACCGCCGTTGCAGCATCCGTCGAAGATAGGAAGACAATCGATAGCTTCTTCGCCGACGAAGGCATCTCATGGAATTCCCTCGGCATCTCCCATCAGCTCTCTCGTGCTCTCTCTAACGTCGGCCTAGAAAAACCGTCTCTGGTTCAGGCTTCTTGCATACCATGTATACTCTCAGGAAACGATGTGGTAGTTGCAGCGGAGACCGGTAGCGGTAAGACACACGGCTACCTGGTCCCACTTATTGACAAGTTATGTGGTGCATCTGATCCTTGTACTGATGGTAATCAAGAGAAATCAACTCGAATCCACAGGGCTTCTCTTGTTCTTTGCCCTAATGTGATGTTATGTGAACAAGTTGCTCGCATGGCTAATTGTCTTCGCATTGATTCTGGTGAACCGCTTCTGAGAGTTGCAACTGTCTGCGGGCGACAGGGATGGCCAGTTGCTCATCCAGATGTTCTTATTTCGACGCCAGCTGCTCTTTTGAATTATCTTTATGCAATTGATCCAGAAAAACGTCGTCGCGCTGACTTTCTTCGCGGCATAAAATATGTGGTTTTTGATGAAGCGGATATGCTGCTCTGTGGAAGTTTTCAGAATCAAGTTATTCGTCTCATAAACTTGTTACGCTTCGAAGAAAAGCAATTGTCTAGGATAAAAAGTTCTGCATTGGAGAGTTCGATGGAATCAAATGCTGAATCTCTGGCGCCTTTTGGGTTGGAAGATGATAAGGAGCTGCAACCTGATTTCATTTCCGAGGAGGAAGATGCTGTGGGTGGTGTTGGCCTTGAAGACTTAAAGGAGATTGAAGTTGGGCCCAACAGGGGAAAAGATTGGAGGAGGGTTAGAAAAGTTTATGAGCGCAGTAAGCAGTACATTTTTGTCGCAGCCACCCTTCCAGTAAATGGCAAGCAGACTGCTGGTGGAGTGTTGAAACGGATGTTTCCAGATGCCAATTGGGTTAGTGGAAATTACCTCCACTGTCACAACCCGAGATTGGAGCAGAGGTGGATCGAAGTTACAGTTGATACACAGGTGGATGCACTCATAGATGCTGTGAAGAAAGGTTTTAGACCTGAAGCTTTTGATTCTGACACAGGTGTTAGTCGAACCATGGTGTTTGCAAATACTGTTGATGCTGTCGAATCTGTGGCTAAGATATTACTGAGAGTTGGGGTTGAATGCATTCGTTACCATAGTGACAGCTCTTTGGAGGAGCGTACAGAGAATTTGATTGATTTCCGAGAAAGAGGTGGCGTTCTTGTGTGCACAGACGCTGCTGCACGTGGGCTTGACATTCCAAACGTTTTGCATGTTATTCAGGCAGAATTTGCAACTTGTGCTGTAGATTTCTTGCATAGGGTTGGACGTACAGCAAGAGCTGGTCAATCTGGACTTGTCACAAGCTTGTACACAGAATCCAATCAGGATCTTGTTGCAGCAGTGCGTCAAGCAGGAAAACTGGGTCAGCCTGTGGAAAAGGCATTCAGCAGGAAAAGGGGCTTCCGGAATAAGCTCAAGAAGAGAGGTACAATCTTTATTTTGTTTTCCTTTTTGAAAATTTCAAATGTTTTAGTGGTCCCCTTAAGACTTTTCCTTAGATTTCATTATGAGCCTGCAATATCCAGTTGTTGCAGCCTCAAGATCTTTATAGTGGTAAACATTCGTTCTAATAAGTGA 1875 0.4507 MIINQPTIRLMMYRQASMLHCCRLCSSSPSRLLPPFKSSSSLQSSAGPLFWLKPLRQRRRTRAFGTAVAASVEDRKTIDSFFADEGISWNSLGISHQLSRALSNVGLEKPSLVQASCIPCILSGNDVVVAAETGSGKTHGYLVPLIDKLCGASDPCTDGNQEKSTRIHRASLVLCPNVMLCEQVARMANCLRIDSGEPLLRVATVCGRQGWPVAHPDVLISTPAALLNYLYAIDPEKRRRADFLRGIKYVVFDEADMLLCGSFQNQVIRLINLLRFEEKQLSRIKSSALESSMESNAESLAPFGLEDDKELQPDFISEEEDAVGGVGLEDLKEIEVGPNRGKDWRRVRKVYERSKQYIFVAATLPVNGKQTAGGVLKRMFPDANWVSGNYLHCHNPRLEQRWIEVTVDTQVDALIDAVKKGFRPEAFDSDTGVSRTMVFANTVDAVESVAKILLRVGVECIRYHSDSSLEERTENLIDFRERGGVLVCTDAAARGLDIPNVLHVIQAEFATCAVDFLHRVGRTARAGQSGLVTSLYTESNQDLVAAVRQAGKLGQPVEKAFSRKRGFRNKLKKRGTIFILFSFLKISNVLVVPLRLFLRFHYEPAISSCCSLKIFIVVNIRSNK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00583 624 Gene3D - 402 578 IPR027417 -
Eupl11g00583 624 CDD SF2_C_DEAD 398 536 - -
Eupl11g00583 624 Gene3D - 57 380 IPR027417 -
Eupl11g00583 624 CDD DEADc 98 280 - -
Eupl11g00583 624 Pfam DEAD/DEAH box helicase 113 283 IPR011545 GO:0003676|GO:0005524
Eupl11g00583 624 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 89 564 - -
Eupl11g00583 624 Pfam Helicase conserved C-terminal domain 434 527 IPR001650 -
Eupl11g00583 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 575 IPR001650 -
Eupl11g00583 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Eupl11g00583 624 SMART ultradead3 106 401 IPR014001 -
Eupl11g00583 624 SMART helicmild6 447 527 IPR001650 -
Eupl11g00583 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 539 IPR027417 -
Eupl11g00583 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 382 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00583 Eupl-Chr11 7398614 7404224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00583 432 544 Eukaryotic Initiation Factors Gene Family AT3G13920 26.724 2.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00583 - - nnu:104607943 793.112