Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00553 ATGGTTTTTCGAGGATACCCATCTCGTAAAATGTCTCAAATCCAGGAAAAAGATAGTATTTTGTCCCTCATACCTCCTATATCTCCTCTTTCTTCTTCTTCATCATCATCATCATCATCATCATCTGGTAGTAGAATCAACCCAGCTGTTCTTTTCATCATAGTTATCTTAGCTGTGATCTTCTTAATCTCTGGTTTGCTCCATCTGCTTGTTAGATTCCTCATAAAGCAACCATCCTCCTCATCAACCTCTCAATCTAACAGATACCCAGAAATGTTTGGTCCTGATGTTCTCCAAAGACAGCTCCAACAGCTCTTCCATCTCCATGATTCAGGACTAGATCAAGCTTTTATAGATGCTCTACCAGTCTTCCTTTACAAAGACATAATGGGTCTTAAAGAGCCCTTTGATTGTGCTGTTTGTCTATGTGAATTCTCAGAAGAAGATAAACTGAGATTGCTTCCAATATGTAGCCATGCCTTCCATATAAACTGTATCGACACATGGCTCCTCTCAAATTCAACATGTCCTCTTTGTAGAGGGACCCTTTATACTCCAGGCCTTTCCCTTGAAAACCCATCTTTTCATTTTGATGATTCAAGGGAAGAAGATGGGTTACCAGGTGATGGAGAAGATTGTTTTTCTTCTGGTCAGAAACCAGTGGAAATGGAGGAGATTGTGAGTGAAAAGAGGGTTTTCCCTGTGAGACTTGGTAAGTTCAGAAATGTTAATAATGGAGGAGGAGGAGAGAGAGGAGAAGCAGAGAGCAGTACTAGTAATTTGGATGCAAGGAGATGTTACTCAATGGGCTCATTTCAGTATGTTGTTGGTGATTCAAATCTGCAAGTGGCTTTATGCCGTGATGGAGATATTAGTGGGGATTTGAAAAAGCTTGTTAAGGGAAAAGGAAGTGGACACTCTGGAAATTCTTCAGTCGATGGGGATGTGGAAGGGAAGAAGCTGATTGGTAGGAGTAAAGGTGAGAGCTTCTCTGTTTCCAAGATCTGGCTCTGGTCCAAGAAAGGCAAATTACCAAGTTCTTCAGACACTAATGTGGGATTGCCATGGACGGAAAGAACTCAGGGTGTATAA 1092 0.413 MVFRGYPSRKMSQIQEKDSILSLIPPISPLSSSSSSSSSSSSGSRINPAVLFIIVILAVIFLISGLLHLLVRFLIKQPSSSSTSQSNRYPEMFGPDVLQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIMGLKEPFDCAVCLCEFSEEDKLRLLPICSHAFHINCIDTWLLSNSTCPLCRGTLYTPGLSLENPSFHFDDSREEDGLPGDGEDCFSSGQKPVEMEEIVSEKRVFPVRLGKFRNVNNGGGGERGEAESSTSNLDARRCYSMGSFQYVVGDSNLQVALCRDGDISGDLKKLVKGKGSGHSGNSSVDGDVEGKKLIGRSKGESFSVSKIWLWSKKGKLPSSSDTNVGLPWTERTQGV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00553 363 SMART ring_2 138 179 IPR001841 -
Eupl11g00553 363 MobiDBLite consensus disorder prediction 343 363 - -
Eupl11g00553 363 FunFam RING-H2 finger protein ATL46 100 185 - -
Eupl11g00553 363 Pfam Ring finger domain 137 180 IPR001841 -
Eupl11g00553 363 CDD RING-H2_EL5-like 137 180 - -
Eupl11g00553 363 SUPERFAMILY RING/U-box 117 186 - -
Eupl11g00553 363 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Eupl11g00553 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 40 336 - -
Eupl11g00553 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00553 Eupl-Chr11 6938386 6939979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00553 35 348 C3H Transcription Factor Family AT2G18650 42.486 1.07e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00553 - - nnu:104595281 480.33