Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00547 ATGTCTCGAGTTTACGTTGGGAACTTGGATCCACGAGTAACAGAGAGAGAACTCGAAGATGAGTTTCGAACGTACGGTGTGCTTCGGAGTGTCTGGGTTGCTCGAAAGCCACCAGGCTATGCATTTGTTGAGTTTGACGATCGTAGAGACGCGCTAGATGCAATCCGTGCATTGGATGGGAAGAATGGCTGGCGCGTGGAGCTTTCTCATAATTCCAAGGGCGGGGGTGGAGGTCGTGGCGGTCGTGGTGGTGGTGGTGGTGGTGGGCGTGGTGGAGGCGAAGACTTGAAGTGTTACGAGTGTGGTGAACCTGGTCATTTTGCCCGGGAATGTCGCTTACGAATTGGTTCAAGAGGCATGGGAAGTGGACGACGTCGAAGCCCCAGTCCTCGACGCCGTAGGAGCCCCAGCTATGGACGCAGGAGTTACAGCCCCCATGGGAAACGATCTCCACGACGTCGCAGCGTATCACCTCGTCGTGGCCGTAGCTATAGCAGGTCACCACCATATCGCCCTGCTCATCATGATTCACCTTATGCAAATGGAGACCAGCGCCGCAGTCGGAGCTGA 570 0.5579 MSRVYVGNLDPRVTERELEDEFRTYGVLRSVWVARKPPGYAFVEFDDRRDALDAIRALDGKNGWRVELSHNSKGGGGGRGGRGGGGGGGRGGGEDLKCYECGEPGHFARECRLRIGSRGMGSGRRRSPSPRRRRSPSYGRRSYSPHGKRSPRRRSVSPRRGRSYSRSPPYRPAHHDSPYANGDQRRSRS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00547 189 CDD RRM_SRSF3_like 3 71 - -
Eupl11g00547 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
Eupl11g00547 189 MobiDBLite consensus disorder prediction 117 189 - -
Eupl11g00547 189 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Eupl11g00547 189 MobiDBLite consensus disorder prediction 67 94 - -
Eupl11g00547 189 SUPERFAMILY Retrovirus zinc finger-like domains 89 114 IPR036875 GO:0003676|GO:0008270
Eupl11g00547 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 172 - -
Eupl11g00547 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Eupl11g00547 189 Gene3D - 97 160 - -
Eupl11g00547 189 Gene3D - 1 96 IPR012677 -
Eupl11g00547 189 ProSiteProfiles Zinc finger CCHC-type profile. 97 112 IPR001878 GO:0003676|GO:0008270
Eupl11g00547 189 MobiDBLite consensus disorder prediction 125 160 - -
Eupl11g00547 189 SMART c2hcfinal6 97 113 IPR001878 GO:0003676|GO:0008270
Eupl11g00547 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Eupl11g00547 189 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Eupl11g00547 189 Pfam Zinc knuckle 97 112 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00547 Eupl-Chr11 6802134 6809424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00547 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 40.323 1.79e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00547 K12896 - nnu:104607901 243.817