Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00543 ATGATCCAGAAAACCTATTGCTATGATCGCCGGATTCTGACATTTCCGGCCGTTCATCCTTGTGAAGCCATCTGTCCGGCAACCCTTCTCTGCTCTTTGATCGCTCTTGCTCACAACATCTGCGATTACCAATCAAAGACCTTCGCAACGCACAAGCGAAACTCACGGGAAGCGATTCGCCAGGTTGGAATTCTTCTCATCTTCTTCGAAGAAATCCTCGACCGCCAATCAGTTCTACCTGACTCAGTCGTCCTCTGCTTCAACGAACTCCATCTTACCTTCCAGAAGATTCGATACTTATTAGAGGATTGCACTCGCGAAGGGGCTCGCCTATGGATTCTAATGAAATCCGAACGCGTATCGACAGAGTTCCGGATCCTCATCCACACTGTCGCAACAGCTCTCGATGTTCTCCCGTTGGGCTCGATCGATGTGTCCACCGAAGTCAAGGAATTTGTTGAATTAGTAGCAAAACAAGCGCAGAAGGCGAAATTTGAGGTCGACCCAGATGATAAACTAATGGCGAAGGATGTTCTTTCAATTTTAAATCAATTCGAGAACAGGGTTTGTCCGGACCCGACTGCTCTGAGGCGGGTTCTCGAACACCTGGAGATCAGAAGTTGGAACGAGTGTAACAAGGAGATTAAGTTCTTGCATGAGGAGATTGGTATGGAGAGCTCGAACGGAGAGGCGAGGAAGAGCATGCTCCTAAGCAGTCTACTGGGGTTCATGAGCTATTGCCGAGCCGTGCTGTTTGATGTCGTAAATGGTCGATGCACTGATCGATCGGATGGTAGCTGTGATGGTGATGCGCTTAATTTCTTGAACCCGGAAGATTTCCGCTGCCCGATCTCTCTTGAGATTATGACAGATCCGGTGACCATAGCTACTGGGCAGACCTACGATCGCGCCTCAATTCTAAAATGGCTCAAGGCTGGAAACCTTAGCTGCCCCAAAACAGGTGAGAAGCTAAAGAACATAGAGTTGTTTCCCAATTCAGCTCTGCAAAAGCTTATTCGGCAATTCTGTTCCAATAACGGCGTTCCGAATGCCGAAGGCAATCGGAAGAGGGATATTACGAGGACGACATATGCTGGCAGCCCAGCAGCAACGGAGGCTATGAGAATGCTTGCTGAGTTTCTCGCCGGAAGGCTTGCGGTCGTTACAGGTGTAGAGAGGAACAAAACTGCTTATGAGATTCGATTGCTAGCGAAATCGAGCATATACAACAGGTCTTGCTTGGTTGAAGCGGGTACGATCCCGTGGCTCCTAAATTTGCTTTCTTCAATGGATCCATCAATCCAAGAGAATGCAATTGCAGCTCTATTGAACCTTTCAAAGCATTCCAAGAGCAAAACAATTATAGTCGAGAATGGAGGATTGATATTGATTCTTGATGTTCTAACAAAGGGATTAAAGATGGAAGCCAGGCAAATGGCAGCAGCTACATTGTTTTACCTTTCTTCCGTCGAAGAGTACCGGAAATTGATCGGTGAAATACCAGACGCAATCCCAGCACTGGTGGAGCTGATCAGGAATGGGACCCCCCGTGGGAAGAAGAATTCTGTGGTTGCGATCTTTGGGCTCCTTCTGTTCCTTGGAAACCATCAAAGGGTGCTGGCAGCTGGAACAGTCCCATTGTTGGTTGATCTTTTGACATCTTCGGAGAGACCGGATCTTGTATCGGATTCTCTAGCAGTTCTAGCAACCATAGCGGAGAAACCTGACGGAACATTTGCAATTTTATGCACCTCAGCCTTATCTGTACTGGGGGGAATTCTTCAGTCCTCCGCATCTAGAGCGGTGAAGGAATACTGTGTTTCATTGTTACTGTCCCTATGCATCAATGGTGGAGCAGAGGTGGTTGCCCTTTTACAGAAGACTCCCTCGTTCGTGGCTTCCTTGTATTCAATTCTCACAGAAGGCACCTCCCGTGCAAGTAAGAAGGCCAGTTCGCTCCTTCGCTTCCTACATGAATCCCATAACCCAAGTTCCTCTGGCTTGTTGACTCCGGCAATTTCACAAGAACGATTTGTTCACGTACGGTAA 2049 0.4783 MIQKTYCYDRRILTFPAVHPCEAICPATLLCSLIALAHNICDYQSKTFATHKRNSREAIRQVGILLIFFEEILDRQSVLPDSVVLCFNELHLTFQKIRYLLEDCTREGARLWILMKSERVSTEFRILIHTVATALDVLPLGSIDVSTEVKEFVELVAKQAQKAKFEVDPDDKLMAKDVLSILNQFENRVCPDPTALRRVLEHLEIRSWNECNKEIKFLHEEIGMESSNGEARKSMLLSSLLGFMSYCRAVLFDVVNGRCTDRSDGSCDGDALNFLNPEDFRCPISLEIMTDPVTIATGQTYDRASILKWLKAGNLSCPKTGEKLKNIELFPNSALQKLIRQFCSNNGVPNAEGNRKRDITRTTYAGSPAATEAMRMLAEFLAGRLAVVTGVERNKTAYEIRLLAKSSIYNRSCLVEAGTIPWLLNLLSSMDPSIQENAIAALLNLSKHSKSKTIIVENGGLILILDVLTKGLKMEARQMAAATLFYLSSVEEYRKLIGEIPDAIPALVELIRNGTPRGKKNSVVAIFGLLLFLGNHQRVLAAGTVPLLVDLLTSSERPDLVSDSLAVLATIAEKPDGTFAILCTSALSVLGGILQSSASRAVKEYCVSLLLSLCINGGAEVVALLQKTPSFVASLYSILTEGTSRASKKASSLLRFLHESHNPSSSGLLTPAISQERFVHVR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00543 682 Gene3D - 533 670 IPR011989 -
Eupl11g00543 682 FunFam RING-type E3 ubiquitin transferase 355 668 - -
Eupl11g00543 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Eupl11g00543 682 SUPERFAMILY RING/U-box 277 348 - -
Eupl11g00543 682 Gene3D - 388 532 IPR011989 -
Eupl11g00543 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Eupl11g00543 682 Pfam Armadillo/beta-catenin-like repeat 410 446 IPR000225 GO:0005515
Eupl11g00543 682 PANTHER U BOX DOMAIN-CONTAINING 67 657 - -
Eupl11g00543 682 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Eupl11g00543 682 FunFam RING-type E3 ubiquitin transferase 276 348 - -
Eupl11g00543 682 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Eupl11g00543 682 SUPERFAMILY ARM repeat 393 661 IPR016024 -
Eupl11g00543 682 SMART arm_5 448 489 IPR000225 GO:0005515
Eupl11g00543 682 SMART arm_5 406 447 IPR000225 GO:0005515
Eupl11g00543 682 SMART arm_5 532 573 IPR000225 GO:0005515
Eupl11g00543 682 CDD RING-Ubox_PUB 277 329 IPR045210 -
Eupl11g00543 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Eupl11g00543 682 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00543 Eupl-Chr11 6747453 6749501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00543 1 680 U-box Gene Family AT1G60190 45.310 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00543 - - ming:122079043 939.873