Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00536 ATGGATTCAGGCCATCTCTTCTTCGATGCCTCCTGCCATGGGAACATGTTACTTCTGGGGAACGGAGATCCCGTTTTTCGAGGGCCAAGATCATTGTGGAACATGGAGGAGACCTCAAAGAGGCGACCCTTTTTCAGCTTTCAGGATGAAATGATGGAAGATGAATTTTATGACGAACAGTCGCCGGAAAAGAAGCGCCGCCTCACCCCTGAGCAGGTTCACCTCTTGGAGAAGAGCTTCGAGGCGGAGAACAAGCTGGAGCCGGAGCGTAAGACCCAGCTCGCCAAGAAGCTCGGGCTGCAACCGAGGCAAGTCGCAGTCTGGTTTCAGAATCGCCGAGCTCGTTGGAAGACAAAGCAGCTCGAGAGAGATTACGATCTCCTTAAGTCCTCTTATGACTCCCTCCTCTCTGATTACGATGCCATTGTCAAGGAGACTGAGAAGCTCAAATCCGAGGTGATGTGCCTTACTGAGAAGGTGCAGGCAACGGAGGTGGGTGGGATGGGGGTTGTGGGTCAGAAATCCGACCCACTAGCTCTGACCGACGACCCCGAGATAGTTGCTGTCAACTTCAGCATGAAGGCGGAGGACCGCTTAAGCTCTGGCAGTGGGGGGAGCGCGGTGGTGGACGAGGATGGTCCACAGCTCTTGGATAGTTGTGATTCATACTTCCCCGACGATGACTACCACTGCGGCATGCCGGTCAACTGCGTTCAATCGGAGGAAGATGACAGAAGTGACGACAGCCGGAGCTACTTCTCAGATGTGTTTACCACTACAGAGCAGCAACAGCAGGAGACTGAGCCATTGGGGTGTTGGGTCTGGTCTTAA 831 0.5391 MDSGHLFFDASCHGNMLLLGNGDPVFRGPRSLWNMEETSKRRPFFSFQDEMMEDEFYDEQSPEKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSDYDAIVKETEKLKSEVMCLTEKVQATEVGGMGVVGQKSDPLALTDDPEIVAVNFSMKAEDRLSSGSGGSAVVDEDGPQLLDSCDSYFPDDDYHCGMPVNCVQSEEDDRSDDSRSYFSDVFTTTEQQQQETEPLGCWVWS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00536 276 SUPERFAMILY Homeodomain-like 62 130 IPR009057 -
Eupl11g00536 276 CDD homeodomain 64 120 IPR001356 GO:0003677
Eupl11g00536 276 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Eupl11g00536 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 258 IPR045224 GO:0003700
Eupl11g00536 276 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Eupl11g00536 276 Gene3D - 57 125 - -
Eupl11g00536 276 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Eupl11g00536 276 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Eupl11g00536 276 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Eupl11g00536 276 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Eupl11g00536 276 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Eupl11g00536 276 SMART HOX_1 62 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00536 Eupl-Chr11 6685024 6687598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00536 1 275 Homeobox Transcription Factor Family AT3G01470 60.498 5.97e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl11g00536 Homeodomain 4.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00536 K09338 - cave:132183258 379.022