Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00516 ATGGCAATCAGGGGCGTCGATTTCAAGTGGTACGATGGGTTCTTCTTATCGATGCTGGCGACGAGTGTAATCATAGTTTCCATCAATTGGAAGCGATATCATCTTTGTACATACCCTTTGCATATATGGATTGTGGTTGATTATACAACTGTCTTTGTTTTTCGGCTGCTGATGTTCATAGACAATGGCCTCGCCGCAGGAATGGGTTTGGATCTAGGGTGGCAGCAAAGATATGCTCGCTTCTGTGGAAGAATTGTGGTTCTTTCAATTCTTTCTCTGCTACTTTACCCCTTTTTATGGGCTTGGACAGTAATTGGTACTCTATGGTTCACAAGAGCAAGAAGCTGTTTGCCCGAGGAAGGTCAAAAATGGGGTTTTCTTATTTGGCTGCTTTTCAGCTATTGTGGACTTGTTTGCATTGCTTGCATGTCTATGGGAAAGTGGCTGACACGAAGGGACGCACACTTACTACGTGCTCAACAAGGGATTCCAATTTCAGAATATGGGATTCTGGTTGATATGATCCGAGTACCTGATTGGACATTTGAAGCTGCCGGTCTGGAAATGAGAGGGATGGGCCAAGATACTACTGCATTCCATCCAGGGTTTTACTTAACCATTACTCAGAGGGAAGCAGTGGAGGCACTCATTCAGGAGCTTCCCAAGTTCAGACTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCCATCTGCCTTGAAGAGTTTCGTGTGGGAAATGAGGTTCGTGGCCTTCCATGCGCGCACAATTTCCATGTTGAGTGCATTGACGAGTGGCTTCGGCTGAATGTGAAGTGTCCCCGGTGCCGTTGCTCTGTCTTCCCTAATCTTGATCTCAGCGCCCTTTCCAACTTCCGAGCTGACTCAGGACACCCCTCTGAGAGTGTTGTGACAACCACACGCTATGTCCAAGCCGAGCCTGTTGGCCAGAGTTATCTGTTGAGATTGCAGGGTCTGCTCTGCCCGATCCGCACAGAAAATGCCATGGCAGGCAATGATGCACACATTGCCTTGGAAGCTGCCGAGAATGGAGCACTGGCAACAGTTACTCAGGGTCCCACAAGCATGGCGGTGCCGGCACCAGCGCCAGTGATGGCATGCACGGTCATTGATCAGTTACCCCCTCATCAGCATTAA 1155 0.4866 MAIRGVDFKWYDGFFLSMLATSVIIVSINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFIDNGLAAGMGLDLGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARSCLPEEGQKWGFLIWLLFSYCGLVCIACMSMGKWLTRRDAHLLRAQQGIPISEYGILVDMIRVPDWTFEAAGLEMRGMGQDTTAFHPGFYLTITQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNFRADSGHPSESVVTTTRYVQAEPVGQSYLLRLQGLLCPIRTENAMAGNDAHIALEAAENGALATVTQGPTSMAVPAPAPVMACTVIDQLPPHQH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00516 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842|GO:0010182
Eupl11g00516 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Eupl11g00516 384 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Eupl11g00516 384 Pfam Ring finger domain 234 276 IPR001841 -
Eupl11g00516 384 SUPERFAMILY RING/U-box 216 284 - -
Eupl11g00516 384 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Eupl11g00516 384 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00516 Eupl-Chr11 6441046 6449970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00516 58 355 C3H Transcription Factor Family AT3G47990 70.432 3.44e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00516 K16284 - nnu:104593208 682.559