Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00513 ATGCATGCGTGGGATGATGGATCAATGTCTATGGCACCACATGGTAGTGACAAGAATACTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTAGCTAGACGACATGGAGATTCTGAAGACTCTACAACTGGAGATCATGATGCCCACTTGAGGCTTTTTTCTTCCTCCCTCGTATATAAATACCTCCCCATCCCCAACCCTTTATCCCCAACCCCTCTAGTTTTTCGTCTCTTCAGTGCACAACAGATAACAGTTATCATGGACAACTCGGAGTCTCCAAGGAACAAGTGTGCTGCATGCTTCAGACAGTTCAACAAATTGGAGCACCTAGTGGATCACATGAGGACCTCATACCACTCAGTTCATGAACCCATGTGTGGGATTTGTAGGAAGCATTGCCGATCTTTTGAATCTCTCAGGGAACATCTTATAGGGCCATTGCCAAAGGTGGAATGTGCTAGGATATTTAGTGTCCGAGGATGCAACCTGTGCTTAACCATTCTTGGTAACCCTAATGCTCTTAGGGTTCATAGAGCGACATGTCAGTTCTCGCGTGTAACCCCTGGACTGGTTTCTCGAATGTCGAACTTGGGCATACACGACAATTTGAGAATCGACCATGGAAGAACAAGAGGCCCTCAGGTAGTTGCACTAAGTTGCAAAATGGTGGGTGGAGGAAGTGATGGCTCTTTGGCTCTTTGTGCAAGGGTGTGCCTCATTGATGAAGATGAAAACATCATCTTCCAAACTTATGTAAAACCCCAGATTCCAGTCACACACTACAGGTATGAAACAACCGGCATACGACCGGAATACTTGCGGGATGCAATGCCACTGAGGCAAGTTCAGAGGAAGATTCAGGACTTCTTGTGCAATGGTGAAGCACTATGGAAGATTCGTTCGAGAGGCGGAAAAGCAAGAATCCTTGTAGGTCATGGTTTGGATCAAGACCTTGAATGTTTAGGAATGGAGTACCCTGCCCATATGATCAGGGATATAGCCAAATATCCTCCCTTGATGAAAACAAGCAAGCTCAGCAACTCACTGAGGCACCTAACACAAGCATACCTTGGGCAAGTACCCTATACACCCAAGCACCTGAAATATTTCTATATGTATGATATTGGTATACAAGACCCACATGAGGATTGTGTAGCCACAATGAGGCTTTACATGAGAATGCGTTCTCAAGATCATCAAATCGAGGAGTATCCGATGGCTACCGATGCACAAAACCGTAACAATTTCGCAGCATGGAGGCAGAATGAACTCGAGAGAATGGCACCTAATGAATTGTTGGAGATTTCAAGGTCTGATTTCTATTGTTGGTGCCTGGACTCCAAGAAAGTGCAGGAAACATGA 1365 0.4542 MHAWDDGSMSMAPHGSDKNTAEREREREREKVARRHGDSEDSTTGDHDAHLRLFSSSLVYKYLPIPNPLSPTPLVFRLFSAQQITVIMDNSESPRNKCAACFRQFNKLEHLVDHMRTSYHSVHEPMCGICRKHCRSFESLREHLIGPLPKVECARIFSVRGCNLCLTILGNPNALRVHRATCQFSRVTPGLVSRMSNLGIHDNLRIDHGRTRGPQVVALSCKMVGGGSDGSLALCARVCLIDEDENIIFQTYVKPQIPVTHYRYETTGIRPEYLRDAMPLRQVQRKIQDFLCNGEALWKIRSRGGKARILVGHGLDQDLECLGMEYPAHMIRDIAKYPPLMKTSKLSNSLRHLTQAYLGQVPYTPKHLKYFYMYDIGIQDPHEDCVATMRLYMRMRSQDHQIEEYPMATDAQNRNNFAAWRQNELERMAPNELLEISRSDFYCWCLDSKKVQET* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00513 454 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 100 437 IPR047021 GO:0004527
Eupl11g00513 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Eupl11g00513 454 MobiDBLite consensus disorder prediction 1 47 - -
Eupl11g00513 454 MobiDBLite consensus disorder prediction 17 47 - -
Eupl11g00513 454 SMART exoiiiendus 215 401 IPR013520 -
Eupl11g00513 454 FunFam RNA exonuclease 4 212 411 - -
Eupl11g00513 454 Gene3D - 213 416 IPR036397 GO:0003676
Eupl11g00513 454 SUPERFAMILY Ribonuclease H-like 217 396 IPR012337 -
Eupl11g00513 454 Pfam Exonuclease 234 344 IPR013520 -
Eupl11g00513 454 CDD REX4_like 217 392 IPR037431 GO:0006364|GO:0008408
Eupl11g00513 454 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00513 Eupl-Chr11 6419538 6422134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00513 88 448 C2H2 Transcription Factor Family AT3G27970 70.637 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00513 - - nnu:104593205 605.905