Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00489 ATGGACAAGAAACCCTGCAATTCCCAAGAAGGTCATGAAGTGAGAAAAGGGCCATGGACGATGGAAGAAGACTTGATTTTGATCAACTACATCGCAAATCATGGGGAAGGGGTATGGAACTCACTAGCTCGATCAGCAGGTCTGAAACGCACCGGAAAAAGCTGCCGCCTCCGGTGGCTCAACTACCTGAGGCCTGACGTCCGGAGGGGTAATATCACACCTGAAGAACAGCTCTTGATCATGGAACTACAAGCTAGGTGGGGAAACAGGTGGTCAAAAATTGCGAGGCAACTACCGGGTAGAACCGACAACGAAATAAAGAATTACTGGAGGACAAGAATTCAAAAACATATTAGGCAGGCGGAGCCTTTCCCAGTGCAGAGTTCTGAGATAAACAATGTTGCTAGCACAAGTCATATGTGTGGAGCTGAAGGAGTTGAATCATGTTCCACATCCTACATAGGAAATCTCGAGGCTTTTCCAGGATCTTTACCTACTGAATCAACTGACAACTTCTGGAGCTTGGAGGATTTCTGGTCTATGCAGTTACTTAATGGTGATTGA 564 0.4628 MDKKPCNSQEGHEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELQARWGNRWSKIARQLPGRTDNEIKNYWRTRIQKHIRQAEPFPVQSSEINNVASTSHMCGAEGVESCSTSYIGNLEAFPGSLPTESTDNFWSLEDFWSMQLLNGD* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00489 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Eupl11g00489 187 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Eupl11g00489 187 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Eupl11g00489 187 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Eupl11g00489 187 CDD SANT 73 112 IPR001005 -
Eupl11g00489 187 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Eupl11g00489 187 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 136 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl11g00489 187 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Eupl11g00489 187 FunFam Myb transcription factor 16 68 - -
Eupl11g00489 187 Gene3D - 73 138 - -
Eupl11g00489 187 CDD SANT 18 63 IPR001005 -
Eupl11g00489 187 Gene3D - 16 68 - -
Eupl11g00489 187 FunFam Myb-related protein 305 73 140 - -
Eupl11g00489 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Eupl11g00489 187 SMART sant 68 116 IPR001005 -
Eupl11g00489 187 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00489 Eupl-Chr11 6114121 6119250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00489 3 187 MYB Transcription Factor Family AT3G01530 56.000 1.87e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl11g00489 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00489 K09422 - vvi:100233097 290.812