Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00479 ATGGCTGCAACGGTGTCCACGTCCTCCAACGGTCCGCGTTATGCGCCAGAAGACCCTACGCTTCCCAAGCCATGGAAAGGCCTAGTTGATGGGAGCACTGGGTATCTTTATTTTTGGAATCCAGATACCAACATAACCCAGTACGAGAGACCCGTTGCTTCCTCAGGCCCAGTTCCTCCAAAGTCTGCTCCGGTACCTATAAGTTCTTCAGTTCAAATTCACCAATCTTTTCAAGGACAACATCGCAATAGTAGTAAAGAGGAAGATGTTCGATATAATGGAGGTACCAATGGTGGCCCCAAGCTTGCTGAAATTCCTGGAGGAAGGAATCATCAGAGTATGAAAGGTGGCAGTGGTCATTCAGGTAATGTTCCTAATGGGTCAGTTAGTGGTTCGCATGGAGGATCTAGCATGTACAACCATGGGCCTAGTGCACAGAATTTAAGGTCATCTGCTAGAGCACACGGATCAGATGTGGGTAGTCGTTCATCAGTGGAGTCCTATCGTCGTCAGCATGAAATAACTGTTACTGGAGATGATGTACCCCCACCATTTATGTCATTTGAATCTACTGGTTTCCCCCCGGAGATTCTTAGAGAGGTACAGCATGCTGGGTTCTCTGCTCCAACACCAATTCAGGCCCAGTCGTGGCCGATTGCTCTACAGAGTCGTGATATCGTTGCCATTGCAAAGACAGGCTCTGGGAAAACCTTGGGTTATCTAATTCCAGGGTTTATTCATCTCAAGCGCTGTCGTAATAATTCTCAGTTGGGTCCAACTGTGTTGGTACTGTCGCCGACGAGGGAACTGGCGACACAGATACAGGTTGAGGCTGTGAAGTTCGGCAAGTCGTCAAGAATCTCATGCACGTGTTTGTATGGAGGAGCCCCAAAAGGTCCCCAGCTAAGAGATCTAGACCGAGGAACAGATATTGTGGTTGCAACACCTGGCCGGCTGAATGATATTCTGGAGATGAGAAGAATTAGCCTCCGCCAAGTTTCATACTTGGTGCTTGATGAGGCAGACCGCATGCTGGACATGGGTTTTGAGCCTCAGATACGGAAGATCGTGAAGGAGATGCCTTCTCGCCGCCAGACTCTCATGTACACTGCAACATGGCCCAAGGAAGTCCGTAAAATTGCGGCAGATTTACTGGTTAATCCTTTTCAGGTTAACATTGGCAGCATAGATGAGCTTGTTGCCAATAAGTCTATCACCCAGTATGTTGAATTGGTGGCACCCATGGAGAAACACCGACGGTTGGAACAGATATTGCGATCTCAAGAACCAGGTTCTAAAGTCATAATCTTCTGCTCGACCAAGAAGATGTGTGATCAGCTTGCTCGTACCATCAGTCGCCAATTTGGAGCTGCCGTCATTCATGGAGACAAATCTCAGGGTGAGAGGGATTATGTGTTGAACCAGTTTCGCTCTGGGAAGTCTCCCATACTTGTAGCCACTGATGTTGCGGCTCGAGGGCTGGATATCAAGGACATCAGGGTTGTCATCAACTACGACTTCCCTACTGGAATTGAAGACTATGTTCACAGGATTGGAAGGACCGGAAGGGCAGGTGCCACTGGAGTGGCTTACACGTTCTTCTCTGACCAGGATGCGAAGCACGCATCTGATCTCATCAAGGTTCTAGTTGGGGCGAACCAGCGAGTCCCACCAGAGATCCGCAACATGGCATCAAGAGGAGGTGGGATGGGCAAGCCTCGACGCCAGTGGGGTTCTGGCTCTGGTGGTCGTGATGGAGGCCGTGCTGGGCGGAACGATTCCAGTTTTGGTGGGAGGGGAGGCCGCGGATCTCTTCCGTCTTCAGGAAGGTCAGAGAGAGGCCATGGAGGTCGCGGACAAGACCGTGAGCCTCGTGACAGGTTCGATCGGGGTTACCATGATGGGCACGATGATGATGGGCATGGAAGATATTCTAGGGGGTACACTGCGAATAATAGTGATCAACGTAATGGAGATAGGGACCGAGTTCACAGCCGAAGCCGCAGTCGCAGCCGAAGCCCGATCAAGGGGAATGGGTGGGGCCACGCCCAGAGTAGGAGCCGCAGCAAAAGCTGGAACCGTGACCGGAGTCGGAGCCGAAGCCGCAGTCGCAGCCTTGACAGGCACAATGGAGCCCCACCGTTTCGAGGTCATTCTTCAGCACTGAGGAGGGATGCTTCGCCAAATGTTCACAGGTCCATGGACTCTGTTCATTCGCCCCCCTCACGTCGGCTGCAACAGGGATCACCATATCGCAGAGAGAAGAGCCCGCTGCGTCAAAGTTCAAAATCCTTCATGAAGCAGAGGGGAAGATCACCGCAGCATGGAGGGGATAATGGAGGACTTGCCAATGGTCGTCCATCCCTGTATCATGGGGAGGAAGAGGAGGAAGGCATGATTCCCGCTGATGAAGAGGGCATAATTCCACCGGAAGACGAAGGCAATGGTGGTAGGAATTCTCCATCGACAAGAGAGGAGGAACCTGATTTACTTAACTGA 2499 0.5138 MAATVSTSSNGPRYAPEDPTLPKPWKGLVDGSTGYLYFWNPDTNITQYERPVASSGPVPPKSAPVPISSSVQIHQSFQGQHRNSSKEEDVRYNGGTNGGPKLAEIPGGRNHQSMKGGSGHSGNVPNGSVSGSHGGSSMYNHGPSAQNLRSSARAHGSDVGSRSSVESYRRQHEITVTGDDVPPPFMSFESTGFPPEILREVQHAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTRELATQIQVEAVKFGKSSRISCTCLYGGAPKGPQLRDLDRGTDIVVATPGRLNDILEMRRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEMPSRRQTLMYTATWPKEVRKIAADLLVNPFQVNIGSIDELVANKSITQYVELVAPMEKHRRLEQILRSQEPGSKVIIFCSTKKMCDQLARTISRQFGAAVIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFSDQDAKHASDLIKVLVGANQRVPPEIRNMASRGGGMGKPRRQWGSGSGGRDGGRAGRNDSSFGGRGGRGSLPSSGRSERGHGGRGQDREPRDRFDRGYHDGHDDDGHGRYSRGYTANNSDQRNGDRDRVHSRSRSRSRSPIKGNGWGHAQSRSRSKSWNRDRSRSRSRSRSLDRHNGAPPFRGHSSALRRDASPNVHRSMDSVHSPPSRRLQQGSPYRREKSPLRQSSKSFMKQRGRSPQHGGDNGGLANGRPSLYHGEEEEEGMIPADEEGIIPPEDEGNGGRNSPSTREEEPDLLN* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00479 832 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Eupl11g00479 832 SMART ww_5 20 53 IPR001202 GO:0005515
Eupl11g00479 832 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 186 214 IPR014014 GO:0003724
Eupl11g00479 832 MobiDBLite consensus disorder prediction 688 711 - -
Eupl11g00479 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 541 IPR027417 -
Eupl11g00479 832 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Eupl11g00479 832 MobiDBLite consensus disorder prediction 818 832 - -
Eupl11g00479 832 CDD WW 22 52 IPR001202 GO:0005515
Eupl11g00479 832 Gene3D - 16 56 - -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 559 832 - -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 73 169 - -
Eupl11g00479 832 SMART ultradead3 205 408 IPR014001 -
Eupl11g00479 832 FunFam probable ATP-dependent RNA helicase DDX17 155 394 - -
Eupl11g00479 832 CDD SF2_C_DEAD 405 534 - -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 732 746 - -
Eupl11g00479 832 Pfam DEAD/DEAH box helicase 210 380 IPR011545 GO:0003676|GO:0005524
Eupl11g00479 832 MobiDBLite consensus disorder prediction 114 164 - -
Eupl11g00479 832 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 337 345 IPR000629 -
Eupl11g00479 832 FunFam ATP-dependent RNA helicase RhlB 396 567 - -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 614 644 - -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 672 687 - -
Eupl11g00479 832 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 391 IPR014001 -
Eupl11g00479 832 MobiDBLite consensus disorder prediction 1 26 - -
Eupl11g00479 832 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 564 IPR001650 -
Eupl11g00479 832 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 158 564 - -
Eupl11g00479 832 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
Eupl11g00479 832 Gene3D - 396 567 IPR027417 -
Eupl11g00479 832 Gene3D - 159 395 IPR027417 -
Eupl11g00479 832 SMART helicmild6 445 525 IPR001650 -
Eupl11g00479 832 Pfam Helicase conserved C-terminal domain 417 525 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00479 Eupl-Chr11 5973264 5982507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00479 184 545 Eukaryotic Initiation Factors Gene Family AT3G19760 35.967 5.54e-67 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00479 K12823 - nnu:104591406 1059.28