Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00478 ATGTTGCTTTCTCTCACTCTCATACAGTATGATACTAAGAACATACAAGATCTCACTTTCCAACCCACATTTTTGTCGGAGAATTACCTTGAACCTGAACATGGAAATGAATTTTCTTTAGAACCATGTTCACCAAAAGAATTTATCCATGATTTTCACCATTTTGATCAGTTTTCTGTTGATGGGTTGTCATCAAATTCAATATTCGGGGTCTCGACATGGTTCTTTGATCCACTCGACACTTTCTCGAATGAGTGTTCGACAAATTTCGATATTTATGAGTCTAAGCCTTTCTCGGAAGAAGCCGATAATGGGTTCTTGGAGAAATTTCGAAATAATGGCTTCTTCAATTGTTCACAGAGAACTCCAACTGAGGTGATAGAACAGGATCGGAGTCGTCGGCCGCTTTCGAATTTCCAAGAATTCGAATCGGGGAATTTTGGAGTACCAGATGAGATTTCATGCATAACTGGGGACCATGGATTTTACAAGGAAGTTCCTTTGAATAAGAAGAATGTGTCAATGATAAGGACAGGCAAAGGTCATAGGAAATCTAATGTAGTAAGAGGGCAATGGACCATGGAAGAAGATAGATTATTGGTGCATTTGGTAGAGCAGTTTGGAGTGAGAAAATGGTCTCATATTTCTCAGATGTTGAATGGGAGAATAGGAAAGCAGTGTAGAGAGAGATGGCACAACCATTTAAGGCCTAACATTAAGAAAGATACATGGAGTGAAGAAGAGGACAAGATCCTAATTCAAGCCCATCAAGATATAGGAAACAGATGGGCAGAAATTGCAAAGAAGTTGCCTGGAAGAACCGAAAACTCCAATAAAAACCATTGGAACGCAACCAAAAGAAGACAATTCTTGAGGCGAAGATGCCGAAGTTCAAAATACCCTCGATCAAGCTCCCTCCTTCAGAACTACATCAAGAGCTTGACATCAAATTCGACGAGGGCCGATTATCGGAAAAATGATTCAACCAACTCCAACACACCGATTGCTAATACTATGATTATAATCAGTTCACCAACTCAACCAGATAATTCAGAATTTTGCTCGAGTGAATGGTTAGTCCCAAATTACGATTTTGACGAGGCCCCGGATTTTTGTTTTGATACAAAGATGCTCCCTGAGAAATGCCGTATTGGGCCTCTCTTTGATGAGATACCTTGTGATTTTGCCGTTGTTGATGATACAAGTATGGAGATGGAGATGGGATGGAGATGCCATTAG 1239 0.4011 MLLSLTLIQYDTKNIQDLTFQPTFLSENYLEPEHGNEFSLEPCSPKEFIHDFHHFDQFSVDGLSSNSIFGVSTWFFDPLDTFSNECSTNFDIYESKPFSEEADNGFLEKFRNNGFFNCSQRTPTEVIEQDRSRRPLSNFQEFESGNFGVPDEISCITGDHGFYKEVPLNKKNVSMIRTGKGHRKSNVVRGQWTMEEDRLLVHLVEQFGVRKWSHISQMLNGRIGKQCRERWHNHLRPNIKKDTWSEEEDKILIQAHQDIGNRWAEIAKKLPGRTENSNKNHWNATKRRQFLRRRCRSSKYPRSSSLLQNYIKSLTSNSTRADYRKNDSTNSNTPIANTMIIISSPTQPDNSEFCSSEWLVPNYDFDEAPDFCFDTKMLPEKCRIGPLFDEIPCDFAVVDDTSMEMEMGWRCH* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00478 412 SUPERFAMILY Homeodomain-like 186 282 IPR009057 -
Eupl11g00478 412 ProSiteProfiles Myb-like domain profile. 236 286 IPR001005 -
Eupl11g00478 412 Gene3D - 181 241 - -
Eupl11g00478 412 Pfam Myb-like DNA-binding domain 192 249 - -
Eupl11g00478 412 CDD SANT 243 286 IPR001005 -
Eupl11g00478 412 SMART sant 188 237 IPR001005 -
Eupl11g00478 412 SMART sant 240 288 IPR001005 -
Eupl11g00478 412 CDD SANT 192 235 IPR001005 -
Eupl11g00478 412 PANTHER MYB PROTEIN-RELATED 189 323 - -
Eupl11g00478 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 239 IPR017930 -
Eupl11g00478 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Eupl11g00478 412 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
Eupl11g00478 412 Gene3D - 242 290 - -
Eupl11g00478 412 FunFam Transcriptional activator Myb isoform A 188 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00478 Eupl-Chr11 5967712 5969801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00478 142 392 MYB Transcription Factor Family AT4G18770 51.321 3.73e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl11g00478 Myb_DNA-bind_6 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00478 K09422 - ming:122078048 432.565