Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00476 ATGAGCGATTCCAAAACCTGTTCGTCTCCGCTTCTAACTGAGAAGTTTTGGATCATCAAAAGGCTGAAATCCGTTTCCGTAACCGATTTACTTTTCATCGATGACATTCTAGATTTCGAGCTCGGATCGGAGGCCGGAAGATCCAACTTAGCGATCGTTTTGATTGTACCTGAGAAACCTAGCATTGGAGGATCTGACGCAATTGCTTGTCTGAATCTGGATCAAACGGTTAGCTTGTTGAGGTATATCGGATCTCATCGGATATTCTTCTTTAGCGTCATTAAACTTCGAGTGCCAGCAGGTTGTAGTGTCGATCCAGTGAACTATGTGGGAAACGAGCATGTAACTGCTCTGAATCGGCCAACCAAACGAGGTAGGGAGGCAGAAGATATTTCAAGGCAGAAAAAGCTTCAGATATCCTTGAATAATAACTTTTACCAAGATGAGGCTGATCGTTCAGCAAGCATCCCTAATCCAAACCCTGTATCAACTGGACTGAGGCTGTCATATGATGATGATGAACGCAACTCCTCTGTGACTTCTGCGAGTGGAAGTATGACAGCAGCTCTTCCTGTCATCTTATCCCTCGGTGACAATCTGAGGACCCAGGTTGATCGGCAGAAGGAAGAATTTGACCATTTCATCAGAGTTCAGGAAGAACAAATTGCAAAGGGAGTGAGGGAGATGAAGCAGAGACATGTGGCTTCCTTCCTTGGTGCCATAGAAAAAGGGGTTGGCAAGAAGTTACGGGAGAAAGAGATTGAGATTGAGAACATGAACCGTAAGAATAGGGAACTGGTTGAGAGAATAAAGCAGGTGGCCATGGAAGCCCAGTCCTGGCACTACAGGGCAAAGTACAACGAGTCCGTGGTCAATGTCTTGAAGAGCAACCTCAAGCAGGCCATTGCACAGGGTGCTGACCAAGGGAAAGAAGGATGCGGGGACAGTGAGGTTGACGATGCAGCCTCCTCTTACATTGACCAAAACCACCTGATCCTGGCTGGATCCGGGAAACCTGTCCCTGGGAGCCACATGGGGTTGAAGGAGCAGATGACTTGCAGAGCGTGCAAGAGAAAGGAGGTCTCGATCCTATTGTTGCCCTGTAGGCACCTGTGCCTGTGTAAGGATTGTGATGGATCTATCGATCTCTGCCCCGTTTGCCAGTCAATGAAGACTGCTAGTGTTCCAGTATACATGTCCTGA 1203 0.4755 MSDSKTCSSPLLTEKFWIIKRLKSVSVTDLLFIDDILDFELGSEAGRSNLAIVLIVPEKPSIGGSDAIACLNLDQTVSLLRYIGSHRIFFFSVIKLRVPAGCSVDPVNYVGNEHVTALNRPTKRGREAEDISRQKKLQISLNNNFYQDEADRSASIPNPNPVSTGLRLSYDDDERNSSVTSASGSMTAALPVILSLGDNLRTQVDRQKEEFDHFIRVQEEQIAKGVREMKQRHVASFLGAIEKGVGKKLREKEIEIENMNRKNRELVERIKQVAMEAQSWHYRAKYNESVVNVLKSNLKQAIAQGADQGKEGCGDSEVDDAASSYIDQNHLILAGSGKPVPGSHMGLKEQMTCRACKRKEVSILLLPCRHLCLCKDCDGSIDLCPVCQSMKTASVPVYMS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00476 400 Coils Coil 249 276 - -
Eupl11g00476 400 MobiDBLite consensus disorder prediction 150 165 - -
Eupl11g00476 400 ProSiteProfiles Zinc finger RING-type profile. 353 388 IPR001841 -
Eupl11g00476 400 MobiDBLite consensus disorder prediction 150 182 - -
Eupl11g00476 400 Pfam Zinc finger, C3HC4 type (RING finger) 350 390 - -
Eupl11g00476 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 400 IPR013083 -
Eupl11g00476 400 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 116 396 IPR017066 -
Eupl11g00476 400 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 337 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00476 Eupl-Chr11 5950826 5954279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00476 349 398 C3H Transcription Factor Family AT1G73950 42.000 1.89e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00476 K19042 - nnu:104593167 509.22