Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00474 ATGTCTACATGCAACCACCTTCTTGATCTCCAAGAGCAGATTTGCTATGTACAGTGTGGTTTCTGCACCACCATTCTACTGGTGAGTGTCCCATGCAGCAGCTTATTGAAGGTGGTTACTGTTAGATGCGGTCACTGCACTGGTCTCCTCTCTGTGAACATGAGAGCTTCATTTGTTCCTCTCGATCAGCTTCTTGCATCCCTCAACGACCACGAGCAAAAACAAGAACTCTACCATGAAGAAATGGAAATTCCAAAAGATCACGAAAGACAAAGCTCACCGATTGCATCTTCCTACAATGAAGAAGAAGAGAGAATCCCAGTGAACCCCACCATTAACAAACCACCAGAGAAGAGGCAACGAGCTCCATCAGCTTATAACCATTTCATCAAAGAAGAGATAAAGAGGCTCAAGGCTAGAGAACCTAACATTACCCACAAGGAAGCTTTCAGCACTGCTGCTAAGAATTGGGCCCATTTCCCTCGAAATCAGCATAAAGGAGTGGGAGAGAGCTGCAGCTCTCCAGGGGAAAAAGTTGCAAGAAACCCAGTTGTTGATGAGGAAATGAAAAACTATGAGAATTGTTTCCCACTTTGCAACTAA 603 0.4461 MSTCNHLLDLQEQICYVQCGFCTTILLVSVPCSSLLKVVTVRCGHCTGLLSVNMRASFVPLDQLLASLNDHEQKQELYHEEMEIPKDHERQSSPIASSYNEEEERIPVNPTINKPPEKRQRAPSAYNHFIKEEIKRLKAREPNITHKEAFSTAAKNWAHFPRNQHKGVGESCSSPGEKVARNPVVDEEMKNYENCFPLCN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00474 200 CDD HMG-box_SF 121 157 - -
Eupl11g00474 200 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
Eupl11g00474 200 SUPERFAMILY HMG-box 111 163 IPR036910 -
Eupl11g00474 200 Coils Coil 61 81 - -
Eupl11g00474 200 Gene3D High mobility group box domain 109 195 IPR036910 -
Eupl11g00474 200 MobiDBLite consensus disorder prediction 84 122 - -
Eupl11g00474 200 Pfam YABBY protein 10 163 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00474 Eupl-Chr11 5930567 5935772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00474 2 161 C2C2-YABBY Transcription Factor Family AT1G23420 60.947 2.97e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Eupl11g00474 YABBY 4.9e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00474 K25796 - ming:122076000 268.855