Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00450 ATGGCGGATTCAAGTTCATCCGCACCCGATAGCGCCCACCCTTCTTCTTCTTCGGATCCGAAAGGTAATAAGAAGGATTTTTCAACTGCAATTTTGGAACGTAAAAAATCTCCTAACCGTCTTGTTGTCGACGAAGCCACAAATGATGACAATTCTGTCGTTTGCATGAACCCTGCAACAATGGAAAAACTTCAGTTTTTCCGAGGAGACACAATTCTAATTAAGGGGAAGAAACGAAAGGACACAGTATGCGTTGTTCTTGTTGATGAGCAATGCGAAGAACCAAAAATCAGAATGAACAAAGTCGTGCGAGCTAATCTCAGGGTACGCCTGGGGGATGTTGTCTCTGTCCATCAGTGTCCCGATGTCAAGTATGGAAAGCGTGTTCACATCCTTCCCATTGATGATACAATTGAGGGTGTGACAGGCAACTTGTTTGATGCGTATTTGAAGCCATATTTTTTGGAGTCTTATCGACCTGTAAGAAAGGGTGACCTTTTCCTAGTTAGGGGGGGCATGCGAAGTGTGGAATTTAAAGTAATTGAGACAGATCCTGGTGAGTACTGTGTTGTTGCACCGGATACGGAGATCTTCTGCGAGGGAGAACCTATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGCTATGACGATGTTGGGGGTGTCAGGAAGCAGATGGCTCAGATTCGTGAGCTTGTTGAACTCCCTCTTAGACACCCACAACTTTTTAAGTCCATTGGTGTAAAGCCCCCAAAAGGTATCTTGCTCTATGGTCCTCCAGGCTCTGGTAAAACCTTGATCGCAAGGGCTGTTGCAAATGAAACAGGTGCATTCTTCTTCTTGATTAACGGGCCTGAGATAATGTCAAAGCTGGCTGGGGAAAGTGAATCTAATTTAAGGAAGGCTTTTGAGGAAGCTGAAAAGAACGCACCTTCTATTATTTTTATAGATGAACTTGACAGCATTGCCCCCAAGAGAGAGAAGACACATGGTGAAGTGGAGAGGCGTATAGTTTCTCAACTTTTGACTTTAATGGATGGTCTTAAGAGCCGAGCCCATGTGATTGTCATGGGAGCTACTAATAGGCCTAATAGCATTGACCCAGCTCTGAGGAGATTTGGAAGGTTTGATCGAGAGATTGACATTGGTGTGCCAGATGAGATCGGGAGGTTGGAAGTTCTTCGAATCCATACAAAGAATATGAAGCTTGCTGAAGATGTTGATCTTGAAAGAGTTGCAAAAGATACCCACGGTTATGTTGGTGCAGATCTTGCTGCTCTTTGCACGGAGGCTGCTCTTCAATGTATCAGGGAGAAGATGGATGTTATCGATTTAGAAGACGAGTCAATTGATGCCGAGATTCTCAATTCCATGGCTGTGACAAATGAGCACTTCCAAACTGCATTGGGATCTTCAAATCCATCAGCATTACGTGAAACAGTTGTGGAAGTGCCTAATGTCTCATGGGAGGATATTGGTGGGTTGGATAATGTTAAAAGAGAGCTTCAGGAGACTGTCCAATACCCAGTGGAGCATCCTGAGAAGTTTGAGAAATTTGGCATGTCTCCATCTAAAGGGGTCCTCTTCTATGGCCCCCCTGGCTGTGGTAAAACCCTACTTGCGAAGGCAATTGCAAACGAGTGCCAGGCTAACTTCATAAGTGTCAAAGGACCTGAATTGCTGACAATGTGGTTTGGAGAGAGTGAGGCCAATGTGCGAGAGATATTTGACAAGGCGCGCCAGTCAGCTCCGTGTGTACTTTTCTTTGATGAACTCGATTCAATTGCAACTCAGCGTGGGAGTTCAGTAGGAGATGCAGGTGGTGCTGCAGATAGGGTTTTGAACCAACTGTTGACAGAAATGGATGGGATGACTGCAAAGAAAACTGTTTTTATCATTGGAGCAACAAATAGGCCAGACATTATCGATCCAGCATTGCTCAGGCCCGGTCGTCTAGACCAGTTGATTTACATACCGCTACCAGATGAGGCATCCCGTTTTCAAATTTTTAAATCATGCTTGCGAAAGTCACCTGTCGCTAGGGATGTTGACCTTTCAGCTCTAGCACGGTACACTCATGGTTTTAGTGGTGCTGATATCACTGAAATCTGTCAGCGTGCCTGCAAATATGCAATCAGAGAAAATATCGAAAAGGATATCGAGAGGGAGAAGAAAAGAAGTGAAAACCCAGAAGCAATGGAAGAAGATGACACTGATGAGGTCCCCGAGATCAAGGCGTCACACTTTGAAGAATCCATGAAGTTTGCTCGTCGGAGTGTGAGTGATGCGGACATACGGAAGTACCAGCTATTCGCTCAGACTCTGCAGCAGTCTCGTGGATTTGGATCAGAATTCCGGTTTCCTGATCGCCCTGAGAATGCTCCAGGCACCGGGGCTTCAGATCCATTCTCTTCTACTGCCACAGCTGGAGACGATGATGACCTATACGGCTGA 2457 0.4542 MADSSSSAPDSAHPSSSSDPKGNKKDFSTAILERKKSPNRLVVDEATNDDNSVVCMNPATMEKLQFFRGDTILIKGKKRKDTVCVVLVDEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRFQIFKSCLRKSPVARDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIEREKKRSENPEAMEEDDTDEVPEIKASHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPDRPENAPGTGASDPFSSTATAGDDDDLYG* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00450 818 SMART AAA_5 524 663 IPR003593 GO:0016887
Eupl11g00450 818 SMART AAA_5 251 387 IPR003593 GO:0016887
Eupl11g00450 818 FunFam Transitional endoplasmic reticulum ATPase 216 384 - -
Eupl11g00450 818 Gene3D - 478 661 IPR027417 -
Eupl11g00450 818 MobiDBLite consensus disorder prediction 722 741 - -
Eupl11g00450 818 SMART CDC48_N_2 40 123 IPR003338 -
Eupl11g00450 818 Pfam Cell division protein 48 (CDC48), N-terminal domain 40 121 IPR003338 -
Eupl11g00450 818 FunFam Cell division control 48 386 477 - -
Eupl11g00450 818 MobiDBLite consensus disorder prediction 782 818 - -
Eupl11g00450 818 MobiDBLite consensus disorder prediction 1 24 - -
Eupl11g00450 818 Gene3D - 665 773 - -
Eupl11g00450 818 Gene3D - 17 122 - -
Eupl11g00450 818 NCBIfam CDC48 family AAA ATPase 41 777 IPR005938 GO:0016787
Eupl11g00450 818 Gene3D - 386 477 - -
Eupl11g00450 818 MobiDBLite consensus disorder prediction 1 33 - -
Eupl11g00450 818 Gene3D - 220 384 IPR027417 -
Eupl11g00450 818 CDD RecA-like_CDC48_r2-like 499 659 - -
Eupl11g00450 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 476 IPR027417 -
Eupl11g00450 818 FunFam Transitional endoplasmic reticulum ATPase 478 661 - -
Eupl11g00450 818 FunFam Cell division control 48 123 219 - -
Eupl11g00450 818 PANTHER AAA-FAMILY ATPASE 417 779 - -
Eupl11g00450 818 Pfam AAA+ lid domain 683 724 IPR041569 -
Eupl11g00450 818 Pfam AAA+ lid domain 407 449 IPR041569 -
Eupl11g00450 818 Pfam ATPase family associated with various cellular activities (AAA) 528 661 IPR003959 GO:0005524|GO:0016887
Eupl11g00450 818 Pfam ATPase family associated with various cellular activities (AAA) 255 384 IPR003959 GO:0005524|GO:0016887
Eupl11g00450 818 SUPERFAMILY ADC-like 36 120 IPR009010 -
Eupl11g00450 818 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Eupl11g00450 818 CDD RecA-like_CDC48_r1-like 219 384 - -
Eupl11g00450 818 ProSitePatterns AAA-protein family signature. 631 649 IPR003960 GO:0005524|GO:0016887
Eupl11g00450 818 SUPERFAMILY Cdc48 domain 2-like 122 214 IPR029067 -
Eupl11g00450 818 FunFam Transitional endoplasmic reticulum ATPase 17 122 - -
Eupl11g00450 818 Gene3D - 123 219 - -
Eupl11g00450 818 SMART CDC48_2_2 140 206 IPR004201 -
Eupl11g00450 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 774 IPR027417 -
Eupl11g00450 818 Pfam Cell division protein 48 (CDC48), domain 2 142 205 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00450 Eupl-Chr11 5606635 5616012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00450 457 720 Calmodulin-binding Proteins AT3G56690 48.106 1.30e-78 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00450 K13525 - ming:122076718 1536.16