Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00419 ATGGGGCGCCATTCTTGTTCTTTAAAGCAAAAGCTAAGGAAAGGCTTATGGTCTCCTGAAGAAGATGAGAAATTGTTCAACCACATCACTAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCTAAACAAGCTGGTTTGGAAAGATGTGGAAAGAGCTGTAGACTGAGATGGATAAACTACTTAAGACCAGATCTTAAGAGAGGAATGTTCTCACAGCAAGAAGAGGATCTTATACTCAGCCTACATGAAGTTTTGGGCAACAGGTGGGCTCAAATTGCAGCACAACTACCAGGGAGAACAGATAATGAGATTAAGAACTTCTGGAATTCAAGTCTGAAGAAGAAACTCAGGCAACAAGGAATCGACCCGAACACGCACAAGCCGTTGAACGAAATTAAGGAACGAGATGAGAAGAGTTGTGGAGAAGATAAGCTTCGAAGCATATCGACATCGGCAGAACTTGAGCAAGCATTGGCCAGAAATCATTCGAGCTACTTCAATTCTGGATTCAGTACTACTGAAGCTTCAAAAGAACATTATTTGACAAAACCAGTCTTTGATCTCATTCCCTCATTTGAATTTCAAGCAGGTTTCGATCTAACTGCGACTAATTCGAACCTTCTCTTTCAATATCACCAAAATTTCAGACCTTTCATCCAGACCCACTTGGCAACAAACTCGAATTGTGAGTTTACTTCAATGCCCAATTTGACTAGTTGTGATTACGGCATGGAGACGGATATTATGGACAATTCGACTTCGGGTAACTGTTACACCGAATTCCAGATGAAAAATATGGTTGAGAATGCAGTTTTTTCTTGGGATCCTGTGACTAGGTTAGAATCTATGTTTCAGTTTGAGCTCAATGGGATAAAATCTGAAGAAATGAAGTTAAGTTCATGGGAAGATCAAGGGAAACAAAATAGAAATAGTTCAGAAGATTTCAGTAGCTCTCCATTAATGTCGCTATCCGAACATTTAACTGGAGCTAGTTTTGATCTCTTGGAGCAGATTTAG 1017 0.4012 MGRHSCSLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLERCGKSCRLRWINYLRPDLKRGMFSQQEEDLILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLRQQGIDPNTHKPLNEIKERDEKSCGEDKLRSISTSAELEQALARNHSSYFNSGFSTTEASKEHYLTKPVFDLIPSFEFQAGFDLTATNSNLLFQYHQNFRPFIQTHLATNSNCEFTSMPNLTSCDYGMETDIMDNSTSGNCYTEFQMKNMVENAVFSWDPVTRLESMFQFELNGIKSEEMKLSSWEDQGKQNRNSSEDFSSSPLMSLSEHLTGASFDLLEQI* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00419 338 FunFam MYB transcription factor 11 67 - -
Eupl11g00419 338 PANTHER MYB DOMAIN PROTEIN 55 1 312 - -
Eupl11g00419 338 MobiDBLite consensus disorder prediction 299 320 - -
Eupl11g00419 338 CDD SANT 17 61 IPR001005 -
Eupl11g00419 338 CDD SANT 70 112 IPR001005 -
Eupl11g00419 338 Gene3D - 69 142 - -
Eupl11g00419 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Eupl11g00419 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl11g00419 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl11g00419 338 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Eupl11g00419 338 MobiDBLite consensus disorder prediction 120 141 - -
Eupl11g00419 338 FunFam Transcription factor MYB86 69 137 - -
Eupl11g00419 338 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Eupl11g00419 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Eupl11g00419 338 MobiDBLite consensus disorder prediction 127 141 - -
Eupl11g00419 338 Gene3D - 11 67 - -
Eupl11g00419 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl11g00419 338 MobiDBLite consensus disorder prediction 303 320 - -
Eupl11g00419 338 SMART sant 13 63 IPR001005 -
Eupl11g00419 338 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00419 Eupl-Chr11 5220514 5222221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00419 1 133 MYB Transcription Factor Family AT4G01680 81.955 2.36e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl11g00419 Myb_DNA-binding 8.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00419 K09422 - nnu:104593107 454.521