Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00411 ATGGCAGCGATGACGAACCCCTTCGACCTTAGATACGCCGACCCCAACTCCTATCGAGAGAGGAGAAGTGATTTTACCGCGCCACAGCAACCAGCAGCACCACCACCTATGATGGGCGGCGGAGTCGGTAGCGGTGCTCCACCGAACATGGGCCGCGGTGGATCCGCCGCTTTCGGAGGATTTCCCGGGCCTTTCACAGCCGGAAGAGGAGGCGGAGGTGTTGGCGGCCCTGCAGCTGGAGGTAGTTTTAACGGGTTTCCGCCTTTCCAGCCTGGTGGTGGTGCGAGAGGGTTCGACCTCGGTAGAGCTGGCGAAGGAAGGGGTTTTAGTATCGGTAGAGGCGGTGGAGGTAGAATGTCCAATGGAGAGCGTGGTGGTAGGAGAGGCGGTGATGGAGGACGGGGCCGTGGTGGTGGTGGTGGTGGTGGAAGGGGTCGTGATGGTGGTGGTGGTGGTAGAGGGTTTGATTCTGGCCGTGGAGGTGGAAGGGGTGGGGCGAGCCGTGGGGGTGGCAGGGCTGGAGGGGGCCGTGGGATTGGTAGGAGTTTCGATGGAGGCCGGGGAGGCGGTAAGAGTTTCGATGGAGGCCGCGGTGGGGGTAGGAGCTTCGATGGAGGCCGCGGTGGCAGTAGGAGCTTTGATGGAGGCCGCGGTGGCAGTAGGAGCTTTGACGGAGGCCGTGGTGGTGGGAGGGGTAGCGGTAGAGACAGTGGAAGGCCGAGAGGAGAGTTAAACAACATTGCTCTTCCCAAGCAGGATTTCGGAAATTTGGTTCCTTTTGAGAAGAATTTTTACTTGGAGAGCCCTTCTGTAACGGCAATGTCTGAACAAGACGTTGTGCTCTACCGCACAAGACGAGAGATCACAGTTGAAGGCTATGATGTTCCAAGGCCGATCCGACTATTTCAAGAGGCCAACTTTCCAGATTACTGCCTCGAGGTCATAGCTAAGTTGGGTTTCGTAGAGCCAACACCTATTCAAGCTCAAGGATGGCCAATGGCGTTAAAGGGTAGAGATTTAATTGGTATTGCTGAAACTGGTTCAGGAAAAACCTTGGCGTATCTGCTGCCGGCATTGTTACATGTTAGTGCACAGCCTCGTTTGGTACAAGGTGAAGGTCCCATTGTACTGGTATTAGCGCCTACTAGGGAATTGGCTGTTCAGATTCAGGAAGAAGCGATGAAATTTGGATCACGGTGGAATATCAGAAGTACTTGCATCTATGGTGGTGCCCCCAAGGGACCTCAGATTCGCGATCTTCAAAAAGGAGTTGAGCTTGTTATCGCCACACCTGGTCGACTGATTGACATGTTGGAAGCTCGCCATACAAACTTGCGGAGAGTAACGTACCTTGTGTTGGATGAGGCTGATCGCATGTTGGATATGGGGTTTGAACCTCAGATCAGGAAAATTGTATCCCAAATTCGTCCTGATAGGCAGACATTGTACTGGAGTGCCACATGGCCGAAAGAGGTGGAGACTTTAGCAAGGCAGTTTTTACATAATCCTTACAAGGTGGTTATTGGATCGGCTGATCTGAAAGCCAATCAATCTATAAATCAAGTTATTGAAGTTATGTCAGAGGTGGAGAAGTATGGCAGGCTGATCAAACTGCTGACAGAGCAGATGGATGGGAGTCGGATCCTGATATTCTTGGAGACAAAAAAAGGATGTGATCAAGTTACACGGCAGCTGAGGATGGATGGATGGCCGGCTCTATCCATCCATGGTGATAAAAACCAGTCCGAGAGGGACTGGGTTTTGGCTGAGTTTAAAAGTGGCAGAAGTCCTATAATGACTGCCACTGATGTCGCTGCACGTGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTCCCATCAAGCCTTGAGGATTATGTTCACAGGATTGGCCGAACTGGCCGCGCAGGTGCCAAGGGGGCTGCATTTACCTTTTTTACACATGCAAATGCAAAGTTTGCGAGGGATCTCATTAAGATCCTACAAGAAGCTGGACAGATTGTGACTCCGCAATTGGCTGCCATGGGCAGGTCAGGTGGTTCTGGTGGAGGAGGGGCTGGGGGTAACTTCCGCTCCAGGGGACGAGGTTTTGGCAACAGGTCTTTGATTTCGGGATCCAATGTTACCCCTCTTGGTGCAAAGAAGCTGTGGTAG 2163 0.5229 MAAMTNPFDLRYADPNSYRERRSDFTAPQQPAAPPPMMGGGVGSGAPPNMGRGGSAAFGGFPGPFTAGRGGGGVGGPAAGGSFNGFPPFQPGGGARGFDLGRAGEGRGFSIGRGGGGRMSNGERGGRRGGDGGRGRGGGGGGGRGRDGGGGGRGFDSGRGGGRGGASRGGGRAGGGRGIGRSFDGGRGGGKSFDGGRGGGRSFDGGRGGSRSFDGGRGGSRSFDGGRGGGRGSGRDSGRPRGELNNIALPKQDFGNLVPFEKNFYLESPSVTAMSEQDVVLYRTRREITVEGYDVPRPIRLFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALLHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAMKFGSRWNIRSTCIYGGAPKGPQIRDLQKGVELVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVETLARQFLHNPYKVVIGSADLKANQSINQVIEVMSEVEKYGRLIKLLTEQMDGSRILIFLETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGAAFTFFTHANAKFARDLIKILQEAGQIVTPQLAAMGRSGGSGGGGAGGNFRSRGRGFGNRSLISGSNVTPLGAKKLW* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00411 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 679 IPR027417 -
Eupl11g00411 720 Pfam Helicase conserved C-terminal domain 531 640 IPR001650 -
Eupl11g00411 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 506 IPR014001 -
Eupl11g00411 720 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 290 678 - -
Eupl11g00411 720 SMART ultradead3 319 522 IPR014001 -
Eupl11g00411 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 508 IPR027417 -
Eupl11g00411 720 SMART helicmild6 559 640 IPR001650 -
Eupl11g00411 720 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 300 328 IPR014014 GO:0003724
Eupl11g00411 720 Gene3D - 513 679 IPR027417 -
Eupl11g00411 720 FunFam probable ATP-dependent RNA helicase DDX17 262 509 - -
Eupl11g00411 720 MobiDBLite consensus disorder prediction 1 248 - -
Eupl11g00411 720 CDD DEADc_DDX5_DDX17 312 507 - -
Eupl11g00411 720 Pfam DEAD/DEAH box helicase 324 495 IPR011545 GO:0003676|GO:0005524
Eupl11g00411 720 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 452 460 IPR000629 -
Eupl11g00411 720 FunFam ATP-dependent RNA helicase RhlB 510 682 - -
Eupl11g00411 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 679 IPR001650 -
Eupl11g00411 720 Gene3D - 273 512 IPR027417 -
Eupl11g00411 720 PRINTS Eggshell protein signature 168 178 - -
Eupl11g00411 720 PRINTS Eggshell protein signature 141 156 - -
Eupl11g00411 720 PRINTS Eggshell protein signature 198 216 - -
Eupl11g00411 720 PRINTS Eggshell protein signature 70 81 - -
Eupl11g00411 720 CDD SF2_C_DEAD 519 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00411 Eupl-Chr11 5133399 5140224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00411 287 660 Eukaryotic Initiation Factors Gene Family AT3G19760 35.561 4.29e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00411 K12823 - nnu:104593097 820.461