Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00410 ATGGATTCCGAGACAAAGGAAAATTCCTCTGACGGAGAAGCTAACGACGTTAAAATCTCAGAGCACGTAGAAGACGAGAAATCTCACCCTTATACGGGAGAAGGAGCCAGTCCAGGAAAGATTTTCATTGGGGGTTTAGCAAAAGAGACAACTCCTGTCCAATTTACCAAACATTTTGGTAAATATGGTGAAATTACAGACTCCGTGATAATGAAAGACCGGAGAACTGGGCATCCCCGTGGGTTCGGATTTGTGACTTATGCAGATCCTTCTGTGGTTGATAAAGTCATTCAAGACACTCATGTTATCAATGGGAAACAAGTGGAAATCAAGCGGACTATACCGAAGGGAGCCATTGGTTCTAAGGATTTTAAGACGAGGAAGATATTTGTCGGTGGAGTTCCTACAACTGTGACGGATGATGAGTTCAAGGACTTCTTTACAAAGTTTGGAGAGGTCAAGGAGCATCAAATCATGCGGGATCATGCCACCAGCCGTTCTCGTGGTTTTGGGTTTATTACATTTGACACGGAGCAAGCTGTCGATGATCTCTTGGCCAACGGGAACAAGATTGAGCTGGCTGGAGCTCAGGTGGAGATCAAGAAGGCCGAACCAAAGAAAGCAAACCCGCCACTGCCACCACCCAAGCGTTTCAAAGATACTAGGCCCGCTTATAGTGGTGGGTTTGGGGATGCTTATGGTGGATACGGTAGAGGTGGTGGTGGTGGCGGCGGCGGCTTTGGTGCAAGTTCTTATAGGTCAGGTGGGGGTTTCGGGGGTAGATCCGGTGCCTACGGTGGAGATGAATTTGGTGTTGGTTATGGTGGATATGGTGGTAGCGGTATAGGAGCTTATAGTGGGGAGCCTTCCCTAGGATACTCAGGCCGCTATGGCGGAGGTTTTGGTAGAGGGTACGATGTAGGAGGTGGTTACGGCGGAGCAGGCGAAGGCTATGGAGGATATGGTGGTGGTGCTAGTGGTGGTTATGGGAGTAGCTATGATGCTGGCCTTGGGGGTGGCTACAGAGGTAGTGGTGGAGGCTCCTTGTATGGAAATAGAGGGGGTTATAGAGGTAGTGGAGGTGGTCGATTCCATCCTTATGCAAGGTAG 1110 0.4928 MDSETKENSSDGEANDVKISEHVEDEKSHPYTGEGASPGKIFIGGLAKETTPVQFTKHFGKYGEITDSVIMKDRRTGHPRGFGFVTYADPSVVDKVIQDTHVINGKQVEIKRTIPKGAIGSKDFKTRKIFVGGVPTTVTDDEFKDFFTKFGEVKEHQIMRDHATSRSRGFGFITFDTEQAVDDLLANGNKIELAGAQVEIKKAEPKKANPPLPPPKRFKDTRPAYSGGFGDAYGGYGRGGGGGGGGFGASSYRSGGGFGGRSGAYGGDEFGVGYGGYGGSGIGAYSGEPSLGYSGRYGGGFGRGYDVGGGYGGAGEGYGGYGGGASGGYGSSYDAGLGGGYRGSGGGSLYGNRGGYRGSGGGRFHPYAR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00410 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Eupl11g00410 369 MobiDBLite consensus disorder prediction 1 31 - -
Eupl11g00410 369 Gene3D - 39 118 IPR012677 -
Eupl11g00410 369 SUPERFAMILY RNA-binding domain, RBD 36 117 IPR035979 GO:0003676
Eupl11g00410 369 MobiDBLite consensus disorder prediction 1 38 - -
Eupl11g00410 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 115 IPR000504 GO:0003723
Eupl11g00410 369 SUPERFAMILY RNA-binding domain, RBD 117 215 IPR035979 GO:0003676
Eupl11g00410 369 Gene3D - 127 210 IPR012677 -
Eupl11g00410 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 38 119 - -
Eupl11g00410 369 SMART rrm1_1 128 201 IPR000504 GO:0003723
Eupl11g00410 369 SMART rrm1_1 40 111 IPR000504 GO:0003723
Eupl11g00410 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 108 IPR000504 GO:0003723
Eupl11g00410 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Eupl11g00410 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00410 Eupl-Chr11 5125359 5129774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00410 39 193 Eukaryotic Initiation Factors Gene Family AT1G71770 26.061 2.13e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00410 K12741 - nnu:104593094 371.318