Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00386 ATGGGACTCTCAAACTTCCCAAGTGCAGCTGAAGGAGTGCTTCCAGTACTAGTGATGAACACGGTTCTCTCAATCTCTTTACTGAAGAACCTGGTGCGATCAGTGCTTCAAGTGATGGGTGGTATTGAAAATCCTCCAGATTTAGTGGAAGATCCTACAAATGAAGGGTACCCACCATTTTCAGAGAATGTAGGAGAGAGAAGAATATCAGTAACCCGGTTCAAATCTTTGTGCAAAAATAGGTCTAGAATTAGAAGAAATATAAGTGGTGATTGGAGTTCGATGGAGTGTTGTGTGTGTCTGCATGGATTTGAAGCTGATGAGGAGGTGAGTGTCTTGTCTTGTAAGCATTTCTTCCACAAGGGTTGTTTGGAGAAGTGGTTGGATCATAACCAGAGTACTTGTCCTCTTTGTAGATCTGCCCTCTAG 429 0.4289 MGLSNFPSAAEGVLPVLVMNTVLSISLLKNLVRSVLQVMGGIENPPDLVEDPTNEGYPPFSENVGERRISVTRFKSLCKNRSRIRRNISGDWSSMECCVCLHGFEADEEVSVLSCKHFFHKGCLEKWLDHNQSTCPLCRSAL* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00386 142 Pfam Ring finger domain 96 139 IPR001841 -
Eupl11g00386 142 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Eupl11g00386 142 SUPERFAMILY RING/U-box 91 141 - -
Eupl11g00386 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Eupl11g00386 142 PANTHER - 1 141 IPR044249 -
Eupl11g00386 142 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00386 Eupl-Chr11 4855395 4856169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00386 1 142 C3H Transcription Factor Family AT2G04240 33.529 1.33e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00386 K16285 - pvy:116118573 194.897