Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00355 ATGTCTTCTGCAACTACAGCTCTCTTCAAGTCTATATCCATGGCGAATGGCTGCTTAACAACTCATCCGACCCTCTTCGCCACCAAAGCTTCGTACCCATTTCTCTCTCTTGCTTCAAAACCTATTAAGCTCCTTCACCTCTCCTCATCTTCGTCTTCATTTCCTTCATGGATTTCTCTCAAAAAGAAGATTTCTTCGTCCTCTGTAATCGCTCTAGTGCAGACCTCCGACTGGGCTCAACAAGAGGAAGAGAGCCAAGTTGAAGAAAAGGAACTCACTTGGGAGAATCAAGAGGTTGAGGACTCTGAAGCTCGTCTCTCGGACTGGGACGGCGAGGGAGAAGAGGGGTCTGAGGAGAGTGGCGCCGAGGATGGAGAAGAGAGCGGCGGAGACGGGTTTGTGGAAGAGTCTTATCCAGAGCCACCTGAAGAGGCGAAGCTTTTTGTTGGAAATTTACCTTATGACATGGATAGTGAGAAGTTGGCTCAGCTCTTCGACCAGGCCGGAGTTGTGGAGGTTGCCGAGGTAATTTACAACAGAGAAACTGACCAAAGTCGTGGGTTCGGGTTCGTCACGATGAGTACTGTTGAAGAGGCGGAGAAAGCTGTGGAGATGCTCAATCGTTATGATGTAAATGGCAGGCCTTTAACTGTCAACAAGGCTGCTCCAAGAGGGTCCCGGCCAGAGCGACCCCCTCGTGTGTTTGAATCTTCCTTCAGAATCTACGTTGGGAACCTGCCATGGCAAGTGGATGATGCTCGCTTAGAGCAGGTTTTCAGTGAACATGGTAAAGTGGCAGATGCCAGGGTCGTTTATGACAGGGAGACTGGACGTTCACGAGGTTTTGGCTTTGTAACAATGTCCACACAGACCGAATTGGATGATGCTATTGCTGCTCTCGATGGACAGAGTTTGGATGGAAGGGCAATCAGAGTGAACGTCGCTGAGGAGAGACCAAGGCGCGGCTCGTTTTGA 975 0.5005 MSSATTALFKSISMANGCLTTHPTLFATKASYPFLSLASKPIKLLHLSSSSSSFPSWISLKKKISSSSVIALVQTSDWAQQEEESQVEEKELTWENQEVEDSEARLSDWDGEGEEGSEESGAEDGEESGGDGFVEESYPEPPEEAKLFVGNLPYDMDSEKLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMLNRYDVNGRPLTVNKAAPRGSRPERPPRVFESSFRIYVGNLPWQVDDARLEQVFSEHGKVADARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEERPRRGSF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00355 324 Gene3D - 229 324 IPR012677 -
Eupl11g00355 324 SUPERFAMILY RNA-binding domain, RBD 140 233 IPR035979 GO:0003676
Eupl11g00355 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Eupl11g00355 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
Eupl11g00355 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Eupl11g00355 324 PANTHER OS02G0815200 PROTEIN 36 319 - -
Eupl11g00355 324 Gene3D - 73 228 IPR012677 -
Eupl11g00355 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 323 - -
Eupl11g00355 324 SUPERFAMILY RNA-binding domain, RBD 231 322 IPR035979 GO:0003676
Eupl11g00355 324 CDD RRM2_NsCP33_like 240 315 - -
Eupl11g00355 324 MobiDBLite consensus disorder prediction 77 141 - -
Eupl11g00355 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 317 IPR000504 GO:0003723
Eupl11g00355 324 MobiDBLite consensus disorder prediction 112 133 - -
Eupl11g00355 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 228 - -
Eupl11g00355 324 SMART rrm1_1 146 219 IPR000504 GO:0003723
Eupl11g00355 324 SMART rrm1_1 240 313 IPR000504 GO:0003723
Eupl11g00355 324 MobiDBLite consensus disorder prediction 83 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00355 Eupl-Chr11 4512305 4517606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00355 143 321 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 2.07e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00355 - - nnu:104593034 466.848