Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00343 ATGAGTCCTGATGAAATCGCAGAGGCAGCTATAAAACACGCTCTGAAGGCTCTGAAAAAGCGCCGTTTGCTCGAAGAAGGCGCTCACTCTCCGGCTTTCACCGCTCTTTCGAGGCCTTTCGTTTCTCAGGGATCAGAATGGAAAGAGAAAGCAGAAAACCTTGAACTGGAACTTCAACAATGTTATAAAGCTCAAGCACGATTGTCTGAGCAGCTTGTGGTGGAAGTGTCTGAGTGCAGAAGCTCAAAAGCCCTTGTTGAAGAGAAAGAAGCAGTAATTGCTGATCTGCAAAAAGAGGTTACTCAAGCAAGGGAAGAATGCTCTCGATTAAGGGAGATTTTAGAAGAAAAGACAGAAGCTCTAGACTTGGTGGTATGCGAGAGACAGGCACTTAAAGCACAACTAGAAGAAGTGAAACTAAAAGCTAAAAATGCAGAAACTGAAAACAAGATGTTGATTGATCGCTGGATGTTGCAAAAGATGCAGGATGCTGAACGGCTTAATGAGGCTAATGCGATTTATGAAGACCTGAGGGATCAACTCAAGGCCAGCAGTGTAGAGCAACTTGCACGGCAGCAAGTTGACGGTGTAGTCCGCCAATTTGAAGCAGGTGCTGAGAACTTCGCGGAATCATCCATTCCCACTGCATGCAAGCACAGGATCCCTGCCCATGAAGGTGGTTGTGGTTCAATTTTGTTTGAGTACAACTCTGATAAGTTGATTAGTGGGGGACAGGACCGCACAATCAAAATGTGGGATTCAAACACGGGGATATTAAGCTGCACTCTTTATGGTTGCCTTGGCTCTGTTCTTGATCTCACTGTTACCCATGATAACAAATCTGTTATTGCAGCGAGCAGCTCAAACAACTTGTGTGTTTGGGATGTGGGGTCCGGTCGTGTCCGTCATACTCTCACAGGCCACACAGATAAAGTCTGTGCTGTAGATGTGAGCAAAGTTTCAAGCCGCCATGTAGTGAGTGCGGCTTATGATCGGACTATTAAAGTTTGGGATCTACAAAAAGGTTACTGCATCAACACAATTATCTCCCACAGCAACTGCAATGCTCTTTGCTTCAGCGGGGATGGACTGACCATTTGCTCAGGTCATGTTGATGGAAATCTTCGGTTGTGGGATATTCAGTCGGGGAGGCTACTAAGTGAAGTTGCTGCACATTCACATGCCGTCACATCAATCTGTCTATCTCGAAACGGCAATACTGTGTTGACGAGCGGGAGGGACAACTTACACAATCTATTTGACATGCGGTCATTGGAAGTTTGTGGCACATTAAGAGCAAATGGAAACAAACTGGCATCTAATTGGAGCCGCTCTTGCATCAGTGCTGATGACAACTATGTTGCGGCAGGATCAGCTGATGGTTCTGTTTACATATGGTCAAGATTAACAGCAAAAATAGTAAGCACTCTAAGGGAACACACTGCTCCTGTTCTTTCTTGTTCATGGAGTGGGCTGGGAAAGCCTCTAGCCTCAGCCGATAAGAATGGAACCATTTGTATATGGACATAG 1530 0.4556 MSPDEIAEAAIKHALKALKKRRLLEEGAHSPAFTALSRPFVSQGSEWKEKAENLELELQQCYKAQARLSEQLVVEVSECRSSKALVEEKEAVIADLQKEVTQAREECSRLREILEEKTEALDLVVCERQALKAQLEEVKLKAKNAETENKMLIDRWMLQKMQDAERLNEANAIYEDLRDQLKASSVEQLARQQVDGVVRQFEAGAENFAESSIPTACKHRIPAHEGGCGSILFEYNSDKLISGGQDRTIKMWDSNTGILSCTLYGCLGSVLDLTVTHDNKSVIAASSSNNLCVWDVGSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLQKGYCINTIISHSNCNALCFSGDGLTICSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSICLSRNGNTVLTSGRDNLHNLFDMRSLEVCGTLRANGNKLASNWSRSCISADDNYVAAGSADGSVYIWSRLTAKIVSTLREHTAPVLSCSWSGLGKPLASADKNGTICIWT* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00343 509 Coils Coil 79 155 - -
Eupl11g00343 509 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Eupl11g00343 509 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Eupl11g00343 509 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Eupl11g00343 509 CDD WD40 217 508 - -
Eupl11g00343 509 Gene3D - 352 442 IPR015943 GO:0005515
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 347 IPR001680 GO:0005515
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 476 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 341 379 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 424 467 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 470 509 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 214 253 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 382 421 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 298 338 IPR001680 GO:0005515
Eupl11g00343 509 SMART WD40_4 256 295 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 343 379 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 446 467 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 385 415 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 473 508 IPR001680 GO:0005515
Eupl11g00343 509 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Eupl11g00343 509 CDD Atg16_CCD 83 171 - -
Eupl11g00343 509 SUPERFAMILY WD40 repeat-like 213 508 IPR036322 GO:0005515
Eupl11g00343 509 PANTHER AUTOPHAGY PROTEIN 16-LIKE 5 481 IPR045160 GO:0000045
Eupl11g00343 509 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 257 - -
Eupl11g00343 509 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 424 IPR001680 GO:0005515
Eupl11g00343 509 FunFam Autophagy-related protein 16 205 509 - -
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 509 - -
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Eupl11g00343 509 Gene3D - 443 509 IPR015943 GO:0005515
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 342 - -
Eupl11g00343 509 Pfam Autophagy protein 16 (ATG16) 45 168 IPR013923 -
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 257 IPR001680 GO:0005515
Eupl11g00343 509 Coils Coil 51 71 - -
Eupl11g00343 509 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Eupl11g00343 509 Coils Coil 160 187 - -
Eupl11g00343 509 Gene3D - 85 351 IPR015943 GO:0005515
Eupl11g00343 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 509 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00343 Eupl-Chr11 4388323 4394518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00343 45 426 U-box Gene Family AT1G04510 28.389 3.59e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00343 K17890 - ming:122067246 838.565