Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00338 ATGCTCTGCATTCTCCTAATTTGTCTTCTAAGCTTCTTTTCTCCCATTATCAGAGCAACCCACCACCTCAACCTCACTCTTCCTCACCAACATCCCAACCCTGAAGCTGTTGTTCAAGAAGTAGAAAGGAGAGTAAATGTGTCCGTCTCGAGGAGGAAAATGTTGGGGGTTTACGACAAGGACGAGTCCTCATGTCAGACCGGTAACCCCATTGACGACTGTTGGAGATGCGACTCTAACTGGCAAGCCAACCGTCAACAACTTGCCAATTGTGGGATAGGTTTCGGTCAGGATGCCCTTGGCGGAAAGGGCGGTCAGATCTATATGGTCAATGATTCATCCGACAGTGATCCGCTCAACCCTATACCGGGGACGCTAAGATACGCTGTTATCCAAACAGAACCCCTATGGATTGTCTTCTCAAGCAACATGCTTATAATGCTTAAACAAGAGCTAATTTTTAACAGCTTCAAGACAATCGACGGCCGCGGTGCTATCGTTCATATTGTGGGCGGGGGTTGTATCACCCTCAAGCACATTAGCAATGTCATCATCCACAACATTCACGTCCACCACTGCTACTCCTCAGGCAATGCTGAAGTACGCACGAGCCCTACCCAGTTCGAGTGGCAAACGAAATCGGACGGCGATGGGATCACTATTTTCGGTGCGAGTAAAATATGGATCGACCACTGCTCCCTGTCTTACTGCACCGATGGACTGATCGATGTTATAATGGGGTCCACGGGGATCACAATCTCCAACAATTACTTCTCGCATCATAATGAGGTGATGTTGTTCGGTCATAGCGACGACTATGTACTGGACAAGGGGATGCAGGTGACCGTGGCGTTCAACTACTTCGGTGAGGCACTGGTCCAGAGAATGCCCAGGTGCCGACACGGCTACTTCCACGTCGTCAATAACGATTTCACAAAATGGGAGATGTACGCCGTCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGGAACCGCTACACTGCGCCATCGAACCCCAGCGCCAAAGAGGTGACGAAGCGCATGGACACGAATGAGGGAGAGTGGACTCATTGGAATTGGAGGACAGAGGGGGATATAATGGTGAACGGAGCCTTCTTCGTGCCCTCCGGAGAGGGTCTTGATGTTAAGTTCATCAACGCTTCTAGTGTCGAGCCCAAATGGGTTGCCCTCATCGACCAGCTAACAATAAACGCTGGTGTCTTGCGTGGGAGCAGCACGTACCCGGAATTCAATGGTGGTGGGACCGGCAAAGTGTCTGGGGTCAGTGGGGTGCGGTCCGGTGGGGAAGTAGGAGTGATCTTCGGGAGCGGCGCACCACTATCTCGGGGAGGAGATGGTGATACAAACTTCTATGGAATGATCTACGGGAGCGGCGCACCACCGCCAACTCCTATCTTCTTGTCTTTCCTGTTGATTTTGTACGTAGAACTCGCACCAATATTGATACTATTATAA 1479 0.5098 MLCILLICLLSFFSPIIRATHHLNLTLPHQHPNPEAVVQEVERRVNVSVSRRKMLGVYDKDESSCQTGNPIDDCWRCDSNWQANRQQLANCGIGFGQDALGGKGGQIYMVNDSSDSDPLNPIPGTLRYAVIQTEPLWIVFSSNMLIMLKQELIFNSFKTIDGRGAIVHIVGGGCITLKHISNVIIHNIHVHHCYSSGNAEVRTSPTQFEWQTKSDGDGITIFGASKIWIDHCSLSYCTDGLIDVIMGSTGITISNNYFSHHNEVMLFGHSDDYVLDKGMQVTVAFNYFGEALVQRMPRCRHGYFHVVNNDFTKWEMYAVGGSANPTINSQGNRYTAPSNPSAKEVTKRMDTNEGEWTHWNWRTEGDIMVNGAFFVPSGEGLDVKFINASSVEPKWVALIDQLTINAGVLRGSSTYPEFNGGGTGKVSGVSGVRSGGEVGVIFGSGAPLSRGGDGDTNFYGMIYGSGAPPPTPIFLSFLLILYVELAPILILL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00338 492 MobiDBLite consensus disorder prediction 328 350 - -
Eupl11g00338 492 SMART amb_all 143 340 IPR002022 -
Eupl11g00338 492 MobiDBLite consensus disorder prediction 328 345 - -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Eupl11g00338 492 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Eupl11g00338 492 SUPERFAMILY Pectin lyase-like 63 389 IPR011050 -
Eupl11g00338 492 Gene3D - 68 410 IPR012334 -
Eupl11g00338 492 Pfam Pectate lyase 152 332 IPR002022 -
Eupl11g00338 492 FunFam Pectate lyase 68 410 - -
Eupl11g00338 492 PANTHER PECTATE LYASE 18-RELATED 26 410 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00338 Eupl-Chr11 4327084 4328562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00338 3 409 Polysaccharide Lyase AT3G53190 67.561 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00338 K01728 - nnu:104604548 711.064