Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00327 ATGGCTAGTCGTCCCTCACTCACTTTTCTCTTCCTCTTTTCTCTTCTGGCTCCATCCCTCATTTCCTCCTCCTCCGTCCAAGACCCTGATCTTGTAGCACAAGAAGTAGAGAGGAGCATCAATGCATCTAGAAGAAACTTGGCCTACCTCTCTTGTGGAACTGGCAATCTTATCGACGACTGCTGGCGGTGTGACCCCAATTGGGAGAAGAATCGCCAACGGCTAGCTGATTGTGTCATTGGGTTCGGTAAGAATGCAATCGGTGGACGTGATGGTCGCATTTATGTGGTTACCGACTCTGGGGATGACGACGCAGTGAACCCCAAGCCGGGAACTCTTCGTTATGCTGTTATCCAAGATGAGCCTCTATGGATCATCTTTGCTCGCGACATGGTCATTAAGCTAAAGGAAGAGCTGATTATGAACTCATATAAGACGATCGACGGTAGAGGTGCAAGTGTTCACATTGCTGGTGGGCCATGCATTACAGTACAGTATGTGACTAACATCATCATACATGGTCTCCACATACATGACTGCACTCCAGGTGGGAATACTAATGTAAGAAGCTCTCCTAGCCACTCTGGGTGGAGAACCATCTCGGATGGTGATGGGATCTCCATATTTGGGAGTAGCCATGTATGGGTTGACCATTGCTCTCTCTCTAGCTGCACAGATGGACTCATTGATGCCATCCATGGATCCACGGCCATCACGATATCAAACAACTACATGACAAACCATGACAAGGTCATGCTCTTGGGCCACAGTGATTCCTTTACCCAAGACAAGAACATGCAAGTCACTATAGCCTTCAACCACTTTGGAGAAGGCCTGGTGCAAAGGATGCCAAGATGCAGACATGGATACTTTCACGTTGTGAACAATGACTACACTCATTGGAAAATGTATGCCATTGGTGGGAGTGCTGCACCTACCATCAACAGCCAAGGGAATAGATTTCTTGCCCCCGATACTAGATTCGACAAAGAGGTGACGAAACGTGAGGAGGCATCAGAGAGCGAATGGAAGAATTGGAATTGGAGGTCTGAAGGAGATTTGATGTTGAATGGTGCATTCTTCACTCCTTCTGGAGCGGGAGCCTCATCCAGCTATGCCAAGGCTTCTAGCTTGGGTGCGAGGCCTTCCTCTCTGGTGGGCTCGATCACGACGGCAGCCGGTGCACTCAACTGCAAGAAAGGTTCAAGCTGCTGA 1215 0.4889 MASRPSLTFLFLFSLLAPSLISSSSVQDPDLVAQEVERSINASRRNLAYLSCGTGNLIDDCWRCDPNWEKNRQRLADCVIGFGKNAIGGRDGRIYVVTDSGDDDAVNPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSYKTIDGRGASVHIAGGPCITVQYVTNIIIHGLHIHDCTPGGNTNVRSSPSHSGWRTISDGDGISIFGSSHVWVDHCSLSSCTDGLIDAIHGSTAITISNNYMTNHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPDTRFDKEVTKREEASESEWKNWNWRSEGDLMLNGAFFTPSGAGASSSYAKASSLGARPSSLVGSITTAAGALNCKKGSSC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00327 404 SMART amb_all 130 327 IPR002022 -
Eupl11g00327 404 SUPERFAMILY Pectin lyase-like 37 398 IPR011050 -
Eupl11g00327 404 FunFam Pectate lyase 55 397 - -
Eupl11g00327 404 Gene3D - 55 397 IPR012334 -
Eupl11g00327 404 PANTHER PECTATE LYASE 18-RELATED 29 402 IPR045032 GO:0030570
Eupl11g00327 404 Pfam Pectate lyase 136 321 IPR002022 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Eupl11g00327 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00327 Eupl-Chr11 4206785 4208491 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00327 2 404 Polysaccharide Lyase AT5G63180 77.396 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00327 K01728 - nnu:104591566 714.146