Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00304 ATGCTTCAAGGTTCCCCTGGCTTCTACTCGTATTCCATTTACGAGCACTTGAATGGATGGCCAGATTTCAATCTCAATGATACCAGGATTGCTTTCAAGCTTAGAAAAGACATGTTTCAATACATGGCCATCAGCGAGAATCGACAGAGACGCATGCCGTTCCCCGAGGACCGTATGTTGGGACGAAGTGAAATTCTGGCATACCCGGAAGCTGTTCGTATGATAGATCCGATTGAACCACAATTCATAGGGGAGGTGGATGACAAGTACCAGTATTCGTGCAACACCGAAGATATCAAGGTTCATGGGTGGGTGACCACTGATCCACCAGTAGGCTTCTGGCAGATCACACCGAGTGATGAGTTCCGAACAGGAGGGCCTCTCAAGCAGGAACTCACCTCCCATGTCGGTCCTACCACTCTTTCAGTGTTTCTCAGCTCTCACTACATGGGACAGGATAAGTTACCGATGTTCCGAAATGGAGAACCGTGGAAGAAAGTTTTCGGCCCGGTTTTCATCTATCTCAATTCGGGTCCAGCTGGTACAAATGTATCCGCACTCTGGGAGGATGCAAATAAACAGATGCTGAGTGAAATTCAAAGTTGGCCATACAGCTTTCCAGTTTCAGATGACTTCTCTAAATCTGAGCACAGGGGTTCTGTTCATGGTAGATTACTGGTTCGAGACAGGTACATCAAGAAACACGATATATCGGCCGGGAGTGCTTATGTTGGGTTAGCTTTACCCGGAGAGGCCGGATCCTGGCAGATGGAATCAAAGGGCTACCAGTTCTGGACTAGAGCTGGTCCCGATGGTTCTTTTTCCATTAACAACGTTCGGGCAGGAGACTATAATCTGTACGCATGGGTCTCTGGCTTTATTGGAGATTACAAATCTGACATACTCATCACCATCCTACCAAGAGAAGACATTAATTTGGGTGATCTGGTATATGAGCCTCCAAGAAATGGTTCCACCTTGTGGGAGATCGGTGTCCCCGATCGTTTGGCCGCTGAGTACTTCATCCCCGATCCCGATCCTCGCTTTGTCAACCCACTCTACGTAAATCAGGACAGGTTTAGGCAATATGGGTTGTGGGAAATGTATAGCACTTTATATCCTAATGAAGATCTTGTTTACACGATCGGCGTTAGCGACTACCGTAAAGATTGGTTCTATGCACATGTTCCACGGAAGATAGAAGAAAATTCCTATCAATCAACCACATGGAAGATTATATTCAAACTCCACAATGTGGATCATAAAGCGACATATAAACTGCGATTGGCGCTTGCATCTGCGACGGGTGCTGAATTGCAAGTCCGGTTCAATGATTTGAACGCGAATCCTCCTCATTTCACGACTGGACGATTGGGCAAGGATAATGCGATTGCGAGACACGGAATTCACGGGTTATACTCGCTGTTTAACATTGATGTGAATAGCCTTTGGCTCACTAAAGGAAACAATACCATCTTTCTCACACAAGCAAAAAGCTCGGGGCCTTTTCGAGGGGTCATGTATGATTATATCCGTTTGGAAGGGTCCTCCAGTACTTCCAGTGCCAAAAAGGTTCATTTGGTGGTGATGGATAATGGGTTGGTTCAAGTCACCCTGTCGAGTCCTGAGGGGATCGTTACCGGAGTACGATATAACGGCATCGATAACTTGCTCGAAATTCTTAATGAAGAAGATAATGGGGGGTACTGGGATCTTTATTGGAAGGAACAGGGACGACCCGGATTGTATGACGTGATTAAAGGGACTAGTTTTAAGATAATCCTACAAACCGAGAAGCAGGTGGAGATTTCCTTCACAAGAACATGGAATCCCTCCCTCAGAGGCTTCATCGTTCCCTTAAATATAGATAAAAGGTTTCACTACATGGCCATCAGTGGGAATCGACAGAGATTCATGCCGTCCCCGGAGGACCGTTCGTTGGGACGAGGCCAGATTCTAGCGTACCCGGAAGCAGTTCGTCTTATAAATCCGATTGAACCAGAATTCAAAGGGGAGGTGGATGACAAGTACCAGTATTCGTGCAACAGCGAAGATATCAAGGTTCATGGGTGGGTGACTTCTGATCCACCAGTAGGCTTCTGGCTGATCACACCAAGTTCTGAGTTCCGATCAGGAGGACCTCTCAAGCAAGAGCTCACCTCCCATGTGGGTCCTACCTCTCTTTCAGTGTTTCTTAGCCCTCACTACATGGGACAGGATAATGTACCGATATTCCGAAACGGAGAAGCGTGGAAGAAAGTTTTCGGCCCGGTTTTCATCTATCTTAACTCGTGTCCAGCTGGTACAAATGGACGACATACACTCTGGGAGGATGCAAATAAACAGGGCTACCAGTTCTGGACTAGAGCTGGTCGTGATGGTTCTTTTTCCATTAACAACGTCCGGGCAGGAGACTACAATCTGTATGCATGGGTCCCTGGCTTTATTGGAGATTACAAATCTGGCACAGTTATTACCATCAGACCAGGAGGATACATTAATTTGGGTGATCTGGTATATGAGCCTCCAAGAGATGGTTCCACCTTGTGGGAGATTGGTGTCCCTGATCGTTTGGCCGCTGAGTTCTTCATCCCTCATCCCAATTCCGGCTTTGTCAACCCACTTTACGTAAATCAGGACAGGTTTAGGCAATATGGGTTGTGGGAAATGTATAGCATTTTATATCCTAATGAAGATCTTGTTTACACGATCGGCGTTAGCGACTACCGAAAAGATTGGTTCTATGCACATGTTCCACGAAAGATGGAAGGAAACTCCTATCAAGCAACTACATGGAAGATTAAATTCAAACTCAACAATGTGGATCATAGAGGGACTTATAAACTGCGATTGGCGCTTGCATCCGCCACGGGTGCTGAATTGCAAGTCCGGTTCAATAACTTGAACGTGAATCCTCCTCACTTCACAACTGGACTAGTGGGTAAGGAAAATGCGATTGCAAGACACGGAATTCATGGGTTGTACTCACTATTTAACATTAATGTGAATTACCTTTGGCTCACTCAAGGAGATAATACCATCTTTCTCACACAATCAAGAGCCTTAGGACCTTTCCAAGGGGTCATATGGGTCGTCGTCCCATTCAAAATCTTGGACCCCATCAGAGCAGAGATCGACCAATCGATATGA 3150 0.4616 MLQGSPGFYSYSIYEHLNGWPDFNLNDTRIAFKLRKDMFQYMAISENRQRRMPFPEDRMLGRSEILAYPEAVRMIDPIEPQFIGEVDDKYQYSCNTEDIKVHGWVTTDPPVGFWQITPSDEFRTGGPLKQELTSHVGPTTLSVFLSSHYMGQDKLPMFRNGEPWKKVFGPVFIYLNSGPAGTNVSALWEDANKQMLSEIQSWPYSFPVSDDFSKSEHRGSVHGRLLVRDRYIKKHDISAGSAYVGLALPGEAGSWQMESKGYQFWTRAGPDGSFSINNVRAGDYNLYAWVSGFIGDYKSDILITILPREDINLGDLVYEPPRNGSTLWEIGVPDRLAAEYFIPDPDPRFVNPLYVNQDRFRQYGLWEMYSTLYPNEDLVYTIGVSDYRKDWFYAHVPRKIEENSYQSTTWKIIFKLHNVDHKATYKLRLALASATGAELQVRFNDLNANPPHFTTGRLGKDNAIARHGIHGLYSLFNIDVNSLWLTKGNNTIFLTQAKSSGPFRGVMYDYIRLEGSSSTSSAKKVHLVVMDNGLVQVTLSSPEGIVTGVRYNGIDNLLEILNEEDNGGYWDLYWKEQGRPGLYDVIKGTSFKIILQTEKQVEISFTRTWNPSLRGFIVPLNIDKRFHYMAISGNRQRFMPSPEDRSLGRGQILAYPEAVRLINPIEPEFKGEVDDKYQYSCNSEDIKVHGWVTSDPPVGFWLITPSSEFRSGGPLKQELTSHVGPTSLSVFLSPHYMGQDNVPIFRNGEAWKKVFGPVFIYLNSCPAGTNGRHTLWEDANKQGYQFWTRAGRDGSFSINNVRAGDYNLYAWVPGFIGDYKSGTVITIRPGGYINLGDLVYEPPRDGSTLWEIGVPDRLAAEFFIPHPNSGFVNPLYVNQDRFRQYGLWEMYSILYPNEDLVYTIGVSDYRKDWFYAHVPRKMEGNSYQATTWKIKFKLNNVDHRGTYKLRLALASATGAELQVRFNNLNVNPPHFTTGLVGKENAIARHGIHGLYSLFNINVNYLWLTQGDNTIFLTQSRALGPFQGVIWVVVPFKILDPIRAEIDQSI* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00304 1049 SUPERFAMILY Galactose-binding domain-like 323 514 IPR008979 -
Eupl11g00304 1049 CDD RGL4_N 1 180 - -
Eupl11g00304 1049 CDD RGL4_N 528 764 - -
Eupl11g00304 1049 CDD RGL4_C 850 1044 - -
Eupl11g00304 1049 CDD RGL4_M 218 316 IPR029413 -
Eupl11g00304 1049 SUPERFAMILY Galactose-binding domain-like 845 1031 IPR008979 -
Eupl11g00304 1049 SUPERFAMILY Starch-binding domain-like 782 836 IPR013784 GO:0030246
Eupl11g00304 1049 Gene3D - 663 784 IPR014718 GO:0030246
Eupl11g00304 1049 Gene3D - 9 191 IPR014718 GO:0030246
Eupl11g00304 1049 Gene3D - 214 305 - -
Eupl11g00304 1049 Pfam Rhamnogalacturonate lyase family 2 86 IPR010325 -
Eupl11g00304 1049 Pfam Rhamnogalacturonate lyase family 523 626 IPR010325 -
Eupl11g00304 1049 FunFam Rhamnogalacturonate lyase B 214 313 - -
Eupl11g00304 1049 SUPERFAMILY Galactose mutarotase-like 530 769 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl11g00304 1049 SUPERFAMILY Galactose mutarotase-like 14 180 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl11g00304 1049 CDD RGL4_C 328 514 - -
Eupl11g00304 1049 CDD RGL4_M 776 838 IPR029413 -
Eupl11g00304 1049 Gene3D - 845 1024 - -
Eupl11g00304 1049 Gene3D - 323 514 - -
Eupl11g00304 1049 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 517 - -
Eupl11g00304 1049 SUPERFAMILY Starch-binding domain-like 260 303 IPR013784 GO:0030246
Eupl11g00304 1049 Pfam Polysaccharide lyase family 4, domain II 241 304 IPR029413 -
Eupl11g00304 1049 Pfam Polysaccharide lyase family 4, domain II 773 834 IPR029413 -
Eupl11g00304 1049 Pfam Polysaccharide lyase family 4, domain III 848 1030 IPR029411 -
Eupl11g00304 1049 Pfam Polysaccharide lyase family 4, domain III 326 513 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00304 Eupl-Chr11 3885289 3901910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00304 521 780 Polysaccharide Lyase AT1G09910 53.268 3.82e-99 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00304 K18195 - pda:103701115 776.933