Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00303 ATGGATAATGGTTTGCTCCAAGTCACCTTGTCGAAACCCGAAGGAATTGTCACCGGAATACGGTATAACGGTATCGCTAACTTACTTGAAACGAGTGTTGAAGAAGACAAAAGAGGGTACTGGGATCTCAATTGGAACAAACAAGGACGTCGTGGTGAACAAGATGTGATAAAAGGAAGGAGCTTTAAGGTAATATTAGAAAATGAAGAACAGGTGGAAGTTTCCTTCCTAAGAACATGGAATAATCCCTCTCTCGTCCCCTTAAACATAGATAAGAGGTTTATAATGCTTAAGGATGTCCATGGCTTCTACACATATGCCACTTTCGAGCACTTGAATGGATGGCCGGATTTCGATCTCAATGAAACCAGGATGGTTTTAAGGCCTAGAAAAGACAAGTTTCAGTACATGGCTATATCGGATAACAGACAGAGGCGCATGCCTTTGCCCGAAGATCGTTCATCGGAACGATGTCAAGTCCTGGCATACCCAGAAGCAGTTCGTTTGACACATCCGATCGAGCCAGAATTCACAGGAGAGGTGGATGATAAGTACCAGTATTCGCGTAACGACGAGGACAACAAGGTTCACGGGTGGATATGCTCCGATCCACCCGTGGGCTTTTGGCAGATCACACCGAGCGATGAGTTCCGAATTGGAGGGCCACTCAAGCAGAACCTCACTTCTCATGTGGGTCCGACCATTCTTGCTATGTTTGTTAGCGCTCACTACATTGGACCAGATGTGACCCCAAAATTTCGGAACGGAGAAGCATGGAAGAAAGTGTTCGGTCCTGTTTTCATCTATTTTAATTCGGGCCCGTCCAGAACAGATGCTCATACACTCTGGAAGGATGCAAATAAACAGATGCAAAGTGAAGTCCAAAGTTGGCCATACAGTTTTCCAGCTTCACCAGACTTCCCTAAAACTGAACAAAGGGGTTCTATTCATGGAAGATTATGGGTCCGGGATAGGTACATTGACAAAAGCGATATATCTGCTGGTTCTGCTTATCTGGGTCTAGCTCAACCCGGAAAGGTTGGATCCTGGCAGCGGGAATGCAAGGGCTACCAGTTCTGGACCAGAGCTGGTCCTGATGGCTCTTTCTCAGTTAACAATATTCGGGTCGGAGACTATAATCTGTACGGATGGGTCCCTGGATTTATTGGAGATTACAAAAATGATTCACTCATTAGCATCAAATCAGGAGGGAAGATTGATTTGGGTGATCTTGTATATGAGCCTCCAAGAGATGGTCCCACCTTGTGGGATATAGGCATCCCTGACCGTTCGGCCGCCGAGTTCTTCATCCCAGATACCAATTCTCTCTATGTCAACCCACTCTACGTAAATCAGGACAGGTTAGTACTTCTCGTCGATCGATCGGGCGTTTCAATGTTTAGGCAATACGGGTTATGGGAGAAGTATAGCATTTCACATCCTAAAGAAGATCTTATTTACAAGATCGGTGTTAGCGACTACCGAAAAGATTGGTTCTTTGAACATGTTACCAGAAAGATCGGGGAAAATTCATATCGAACAACCACATGGCAGATTCAATTCAAACTCAAGAAAGAGGCACGAAGCGCATCATATAAACTTCGATTGGCACTTGCATCCGCTTCTGGTGCTGAATTGCAAGTCAGAACCAATGTTGTTCAAGCTAGCAGCACTCGCCTTCCATTTCTCATAAAGCCTCAAGACCTTGAACCAGCCCAGTTTATAATTGTATCAGGGTGCAATAACAACTGTGAAGTAGCTTGTTGTTATTGTGATGTTAAGAAACAACCCCCAGTCTGTGTGAAGTGCTGCCAGGAATAG 1821 0.4498 MDNGLLQVTLSKPEGIVTGIRYNGIANLLETSVEEDKRGYWDLNWNKQGRRGEQDVIKGRSFKVILENEEQVEVSFLRTWNNPSLVPLNIDKRFIMLKDVHGFYTYATFEHLNGWPDFDLNETRMVLRPRKDKFQYMAISDNRQRRMPLPEDRSSERCQVLAYPEAVRLTHPIEPEFTGEVDDKYQYSRNDEDNKVHGWICSDPPVGFWQITPSDEFRIGGPLKQNLTSHVGPTILAMFVSAHYIGPDVTPKFRNGEAWKKVFGPVFIYFNSGPSRTDAHTLWKDANKQMQSEVQSWPYSFPASPDFPKTEQRGSIHGRLWVRDRYIDKSDISAGSAYLGLAQPGKVGSWQRECKGYQFWTRAGPDGSFSVNNIRVGDYNLYGWVPGFIGDYKNDSLISIKSGGKIDLGDLVYEPPRDGPTLWDIGIPDRSAAEFFIPDTNSLYVNPLYVNQDRLVLLVDRSGVSMFRQYGLWEKYSISHPKEDLIYKIGVSDYRKDWFFEHVTRKIGENSYRTTTWQIQFKLKKEARSASYKLRLALASASGAELQVRTNVVQASSTRLPFLIKPQDLEPAQFIIVSGCNNNCEVACCYCDVKKQPPVCVKCCQE* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00303 606 CDD RGL4_M 312 411 IPR029413 -
Eupl11g00303 606 Gene3D - 1 287 IPR014718 GO:0030246
Eupl11g00303 606 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 555 - -
Eupl11g00303 606 Pfam Polysaccharide lyase family 4, domain II 337 407 IPR029413 -
Eupl11g00303 606 Gene3D - 419 573 - -
Eupl11g00303 606 CDD RGL4_N 1 279 - -
Eupl11g00303 606 SUPERFAMILY Galactose mutarotase-like 4 274 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl11g00303 606 Pfam Rhamnogalacturonate lyase family 1 181 IPR010325 -
Eupl11g00303 606 FunFam Rhamnogalacturonate lyase B 309 408 - -
Eupl11g00303 606 SUPERFAMILY Starch-binding domain-like 346 408 IPR013784 GO:0030246
Eupl11g00303 606 Pfam Polysaccharide lyase family 4, domain III 421 557 IPR029411 -
Eupl11g00303 606 SUPERFAMILY Galactose-binding domain-like 418 566 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00303 Eupl-Chr11 3879086 3884399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00303 1 555 Polysaccharide Lyase AT1G09910 59.464 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00303 K18195 - nnu:104588462 769.229