Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00296 ATGTGGCAAAGCCAGCCCCACAAATCTTCTTACAAAGAATCTATCAAAGCTCTTGAAGCTGATATACAACATGCCAATGCCCTGGTGGCGGCTCTCCCAAGAGATTATGCTGGGGAATGTGTTCAGATGAGATTATCTTTCAGCCCTTTTGCACCCATCTTTCGCTTTTTGGTTGAATGGATGGATTGTAATTGTACAGATACCTTGCCAAATTATTTAGGCCTTCTCTACATACTTATATACAAGGTATACGTTGATGGCAAGACAACCATACCTTCGCATGAAAGGAAAGCCACCCTTAGGGAATTCTATGCTGTTATATATCCTTCGCTTCGGCAACTGGAAGGTGATTGTACCGAATTGGAAGATAATAATAAGGGAGGTTGGTGCATGGAAGTTTTGGACAGGAAGAGGGTCGAAGAGGGGAGGAAGCTCTTCGATAAGTATCCAGACAGAGAGGACGAATGCGGGATTTGTATGGAAGCTTGCACCAAGATGGTCTTGCCCAACTGCAGTCACTCCATGTGCATCAGCTGCTTTCGTGACTGGAATATGCGATCTCAGTCCTGCCCTTTCTGCCGAGGTAGCCTAAAGAGAGTTAACTCAAAAGACTTGTGGGTTCTCATCAGTAATGGCGATGTGGTTGACACGACAACTCTTGCAAAGGAGAATCTGAAACATTTCCATCTTTATATCGATAGCCTGCCTCTCATAATGCCCGACGCCCTTTTCTTTGTATACGATTACATGATCTAA 756 0.4431 MWQSQPHKSSYKESIKALEADIQHANALVAALPRDYAGECVQMRLSFSPFAPIFRFLVEWMDCNCTDTLPNYLGLLYILIYKVYVDGKTTIPSHERKATLREFYAVIYPSLRQLEGDCTELEDNNKGGWCMEVLDRKRVEEGRKLFDKYPDREDECGICMEACTKMVLPNCSHSMCISCFRDWNMRSQSCPFCRGSLKRVNSKDLWVLISNGDVVDTTTLAKENLKHFHLYIDSLPLIMPDALFFVYDYMI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00296 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 204 IPR013083 -
Eupl11g00296 251 FunFam RING/U-box superfamily protein 136 203 - -
Eupl11g00296 251 SUPERFAMILY RING/U-box 155 199 - -
Eupl11g00296 251 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Eupl11g00296 251 SMART ring_2 156 193 IPR001841 -
Eupl11g00296 251 Pfam Zinc finger, C3HC4 type (RING finger) 153 199 - -
Eupl11g00296 251 PANTHER RING FINGER PROTEIN 41, 151 8 248 - -
Eupl11g00296 251 Coils Coil 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00296 Eupl-Chr11 3844978 3847440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00296 130 205 C3H Transcription Factor Family AT5G01960 29.870 3.24e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00296 - - psom:113292924 391.349