Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00290 ATGGCGGGCGTGGAAGTAGCGGAACCGAGAAAGTTGCCTCGACCGGGTCGAGGAGGGGTTGTCGCGCATGGACTCAGCGAAGAGGAAGCCCGAGTGCGAGCCATCGCGGAGATCGTGAACGGCATGGTGGAGCGGTCGCGCAGAGGCGAGAACGTCGACCTCAACGCTCTCAAGTCCGCCGCTTGCCGCAGGTACGGCCTCGCTCGCGCTCCCAAACTCGTTGAGATGATCGCCGCGTTGCCCGAGTCTGATCGCGAATCTCTGCTCCCTCGCCTCCGAGCCAAGCCCGTCCGCACCGCTTCTGGCATCGCCGTCGTCGCTGTCATGTCAAAGCCCCATCGATGCCCTCATATCGCCACCACTGGGAACATCTGTGTTTACTGCCCAGGTGGCCCCGACTCTGATTTCGAGTACAGTACCCAGTCCTACACTGGGTATGAACCTACCAGTATGCGAGCAATTCGTGCGAGATACAACCCATATGTCCAGGCTAGAAGCAGAATAGATCAACTGAAGCGGTTGGGACACAGTGTGGATAAGGTTGAATTCATCTTAATGGGGGGTACTTTTATGTCATTGCCGTCCGAATATCGTGATTATTTTACACGGAATCTTCATGATGCTTTATCAGGACACACTTCTGCAAATGTTGAGGAGGCTGTCTGTTACTCTGAACATAGTGCAATAAAGTGTATCGGCATGACAATTGAAACGAGGCCAGACTATTGCCTTGGGCCTCATTTACGACAAATGCTTTCTTATGGTTGTACACGACTGGAGATAGGAGTTCAAAGCACATATGAGGATGTTGCCCGTGACACTAATAGAGGTCACACAGTAGCTGCTGTAGCTGATTGCTTTTGCTTGGCTAAGGATGCTGGTTTTAAGGTTGTTGCTCACATGATGCCCGATCTTCCGAATGTTGGTGTAGAGAGAGACTTGGAAAGTTTTAAGGAATTCTTTGAAAGCCCATCATTTAGGCCGGACGGTCTTAAAATCTATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACCGGCAGGTATAGAAATTACCCACCAGAGCAACTTGTGGACATAATAGCAAGGATCCTAGCCATGGTACCTCCGTGGACACGTGTCTATAGAGTTCAGAGGGACATACCCATGCCTCTCGTCACTTCCGGAGTTGAGAAAGGAAATCTTCGGGAGTTGGCTTTAGCTCGGATGGATGACTTGGGCTTGAAATGCCGCGATGTTAGGACACGTGAAGCTGGAATTCAGGACATTCACCACAAAATAAAGCCTGAAGAAGTAGAGCTTGTTCGCCGTGATTATTCGGCCAATGAGGGTTGGGAAACTTTTCTCTCATATGAAGATACACGTCAGGATATTCTTGTTGGGTTGTTGCGCTTGCGGAAATGTGGGCGGAACACCACCTGCCCGGAGCTCACTGGGAGGTGTTCGATTGTTCGTGAACTCCATGTTTATGGAACTGCAGTTCCAGTGCATGGGCGGGATGCCGACAAACTGCAGCACCAGGGTTATGGGACGCTTTTGATGGAAGAGGCAGAACGGATTGCTCGTAAGGAGCATAGATCAACAAAATTAGCTGTAATTTCAGGGGTTGGAACCCGCCATTATTATAGAAAGTTGGGGTATGAGCTCGAGGGGCCTTACGTGGTAAAATATCTAGTGTCATAA 1695 0.5021 MAGVEVAEPRKLPRPGRGGVVAHGLSEEEARVRAIAEIVNGMVERSRRGENVDLNALKSAACRRYGLARAPKLVEMIAALPESDRESLLPRLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPSEYRDYFTRNLHDALSGHTSANVEEAVCYSEHSAIKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFKEFFESPSFRPDGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRRDYSANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELTGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARKEHRSTKLAVISGVGTRHYYRKLGYELEGPYVVKYLVS* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00290 564 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 562 IPR034687 -
Eupl11g00290 564 Gene3D - 414 562 - -
Eupl11g00290 564 SFLD elongater protein-like 53 562 - -
Eupl11g00290 564 SFLD ELP3-like 53 562 IPR034687 -
Eupl11g00290 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 564 IPR000182 GO:0016747
Eupl11g00290 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 19 562 IPR039661 -
Eupl11g00290 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 315 558 IPR016181 -
Eupl11g00290 564 PIRSF HAT_Elp3 21 563 IPR034687 -
Eupl11g00290 564 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Eupl11g00290 564 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Eupl11g00290 564 Pfam Radical_SAM C-terminal domain 328 407 IPR032432 -
Eupl11g00290 564 CDD Radical_SAM 112 359 - -
Eupl11g00290 564 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Eupl11g00290 564 FunFam Elongator complex protein 3 411 563 - -
Eupl11g00290 564 SUPERFAMILY Radical SAM enzymes 135 374 - -
Eupl11g00290 564 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Eupl11g00290 Radical_SAM 3.3e-18 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00290 K07739 - nnu:104591610 1105.51