Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00286 ATGGCGATAGAAGAGAACCAGAGCCCACAAAACCCAAAACACTTACCAAAAGGATCGGTCTCGGTCGGAAATGGCGGAAACGGAGACACCATTATCAGTCCCAGATTCCGATCCGTGGCTGCCATGGCTGGTTGGGACGAAGAAGCGCTTTTACTCGCAAGCCTCGTCGTCGAAGACACACCAGAAAGAGAATCCAAATACCGGAAACGTATAAATCTGCAGTTCAAGACCCCACCAGCGAGTTCAAGAAGAAAACGCAGAGCTCAGAGGCCAAGTCCTGATTCGATCCCCACTGTTGTTCTTAACCTTGACGATGAGGAGACTGTTGGAGAAGCAGAGAATGACACAAAGACGATTGAATCGAAACTCAACGCGGTTGAAGAAAAGAAGAGAGAAGAAGAAGAAGAAGGTAAAGACGCTTTACCTGCACAGGCGCCCGCTGTTTCTTCTTCGGGTTCGGCTCTTCCTTGCATGGATCGATTGAGGGAAGAGCTCTCTTGTGCAATTTGTTTGGAGATTTGCTTCCAACCGAGTACTACTCCTTGCGGCCACAGCTTCTGTAAGAAATGCTTGAAATCTGCTGCTGATAAATGCGGGAAGCGATGTCCCAAGTGCAGGCAACTAATCAGTAATGGGAGATCTTGCACTGTGAACACAGTACTTTGGAACACAATACAGCTTTTGTTTCCACAAGAGGTCGAAGCAAGGAAGGCGGCGGGGGCGATAAATAGTCGTGAAGCTGATCGTGAAAGTCCTGAAAAGGACAATCCTAACATAAGAAATCGAAGCAACCGGACTTCTGCCGTAATTAGCAGAGATGTTAGTGTGAATCGAAGCACCCGGACTTCTGCAGTAATTAGCAGAGATGTTAGTGTGAGGCGAAGAAGAGGTTTGCCGATTCAAGCTGAGGATGCTGCATTAGCTTTAAGGTTGCAGAGGGAAGAGTTTATGGAAGTTTTTAGGGGAACCAGTGAGCAATTAGGAACAATCCCTTTTTCGTCTGCGAGAGCAAACCTAAGAGCCATGGCATCAAGAGCCATTAACCTTCGCGTTAGAGGCCGACCGATGTAG 1071 0.4781 MAIEENQSPQNPKHLPKGSVSVGNGGNGDTIISPRFRSVAAMAGWDEEALLLASLVVEDTPERESKYRKRINLQFKTPPASSRRKRRAQRPSPDSIPTVVLNLDDEETVGEAENDTKTIESKLNAVEEKKREEEEEGKDALPAQAPAVSSSGSALPCMDRLREELSCAICLEICFQPSTTPCGHSFCKKCLKSAADKCGKRCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAGAINSREADRESPEKDNPNIRNRSNRTSAVISRDVSVNRSTRTSAVISRDVSVRRRRGLPIQAEDAALALRLQREEFMEVFRGTSEQLGTIPFSSARANLRAMASRAINLRVRGRPM* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00286 356 Pfam Zinc finger, C3HC4 type (RING finger) 167 205 IPR018957 GO:0046872
Eupl11g00286 356 MobiDBLite consensus disorder prediction 60 147 - -
Eupl11g00286 356 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Eupl11g00286 356 MobiDBLite consensus disorder prediction 112 140 - -
Eupl11g00286 356 SMART ring_2 167 205 IPR001841 -
Eupl11g00286 356 MobiDBLite consensus disorder prediction 1 32 - -
Eupl11g00286 356 PANTHER UNCHARACTERIZED 302 348 - -
Eupl11g00286 356 MobiDBLite consensus disorder prediction 241 260 - -
Eupl11g00286 356 MobiDBLite consensus disorder prediction 241 265 - -
Eupl11g00286 356 SUPERFAMILY RING/U-box 159 230 - -
Eupl11g00286 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 236 IPR013083 -
Eupl11g00286 356 MobiDBLite consensus disorder prediction 1 28 - -
Eupl11g00286 356 Coils Coil 109 136 - -
Eupl11g00286 356 ProSiteProfiles Zinc finger RING-type profile. 167 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00286 Eupl-Chr11 3747925 3749771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00286 164 210 C3H Transcription Factor Family AT3G07200 48.936 9.99e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00286 - - nnu:104591618 413.69