Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00241 ATGGATATCGCGGAGGTTGAAGAAAGCCTTTTTGCCGCCACCGATGCCAAGTTACATGGAGGGATGTGTAGAATATTTTCTGCAATTGTTTGTAAAGTTTTGGGAATCTTTCCAGTCTTAGAAGCAGCACGTCCGAGGAGCAAGTCGGGTATCCAGGCCCTATGTTCGTTGCATGTTGCACTTGAGAAAGCCAAGAATCTTCTTCAACATTGCTCAGATTGTAGTAAACTTTACTTGGCTATAACTGGGGACTCCATTCTCCTAAAATTTGAGAAGGCAAGATCTGCACTTGAGGATAGTCTTAGGCGTGTCGAAGATATCGTCCCGGAATCGATTGGTTGTCAGATTTCCGAGATTGTAAATGAACTTGAGGTGACGGTATTTTCACTTGATCCGTCAGAGAAGCAAGTTAGTGATGAAATTATTGCATTGCTCCAGCAAGAGAGAAAATTTAACAACAATTGTAATGATAATAATGAGCTTGAAACCTTCCACAAAGCTGCATCAAGGCTTGGCATTACTTCTTCGAGAGCAGCTCTCACAGAGAGAAGAGCTCTCAAGAAGCTGATTGAAAGAGCCCGCGCCGAGGAAGATAAAAGAAAGGAGTCCATCGTGGCTTACCTTTTCCATCTCATGAGAAAATACTCCAAGCTATTCAGAAGTGAATTCTCGGACGATAATGATTCACAGGGATCTGCTCCTTCTTCCCCAACTGTTCAGGGATCATTCGAGGAATACAGTGGGCTTGGGGCAAATGGCCAAGCATTTGAGCGGCAGCTCTCGAAACTGAGTTCTTTCAATTTTAAGCCTAGCGGCACGAAATCAGGGCAGATGCCAGTACCTCCCGAGGAATTGAGGTGTCCGATTTCGTTGCAGCTCATGTATGACCCGGTCATTATCTCGTCTGGGCAGACTTATGAGCGAGTCTGCATTGAGAAATGGTTCAGTGACGGGCACAGCACCTGCCCGAAGACTAAGCAGAAGCTTGCCCATCTTTGTTTGACTCCAAATTACTGTGTCAAGGGTCTCATTGCTGGTTGGTGCGAACAGAATTGTGTCATTGTTCCTGATGCCCCCCCAGGCTCTCTTGATCTCAACTACTGGAGGCTAGCAATATCGGAGTGTGAGTCGACGAATTCAAGATCCATGGAAAGCATCAGCTGCTGCAAGTTGAAGGGAGTTAAGGTGGTTCCTCTGGAGGAGAGTGGTATTACTGAGGAAATCAAAGGAAATGAAATTAGAGATGTGTCCGGCCAGGAGGACTGTGAAGTGGACATGTTTGAAAGGTATGAGAGCTTACTAGCCATCTTGTGTGGAGGGGAAGATATAAGGAGACAATGCAAAGTGGTAGAACAGATACGGTTCTTGTTGAAGGATGACGAAGAAGCCAGGATTTTAGTGGGGGCTAATGGGTTCGTCGAGGCGTTGGTGCGATTTTTGAGCTCATCTGTTCATGAGGGGAATGAGAAGGCTCAGGAAATTGGTGCTATGGCTCTCTTCAACCTTGCTGTTAACAATAACAGGAACAAGGAGAAGATGTTATCTGCAGGAGTAATTCCATTGTTGGAGGAGATGATCCTCAATTTGAACTCCTATGAATCAGCTACAGCACTATATCTGAACCTCTCCTGTCTTGAAGAAGCCAAGACCATCATTGGATCAAGCATGGCAGTTTCTTTCTTAGTCCAGCTCCTCCAAACCAACTCTACACCCCAATGCAAGCTCGATGCCCTCCATGCCCTCTACAACCTCTCCACCCACTCATCCAATGTCTCCCACCTCCTCTCAGCTGGCATCATAGAAGGGCTTCAAGCTCTCCTCACAGGACCCATGGACCACACATACGCTGAAAAGTCGATTGCTGTCATTATAAACTTAATCTCAAATAAATCAGGAAAAGAAGGAATTATATCGACCCCAGGTCTTATTAGTGGGCTTGTTGCTATCTTGGATACAGGCGAGCCCGTTGAGCAGGAGCAAGCTGTTTTGTGTCTTTTTATCTTATGTAATGGGAGTGAGAAATGCAGTGATATGGTGCTACAAGAAGGGGCGATACCTGCATTGGTATCGATCTCAGTGAATGGGACAACTAAAGGTAAAGAGAAGGCACAGAAATTGCTGATGCTGTTTCGAGAGCACCGGCAGCGGGACCCATCGCCTGTTCGGATGCAACAGCAGCATGAGAATAGTGACGAGTCACCGGCTGCTCCAGAATCGAAGCCGCTCTGTAAATCAACTTCCAAGAAGACAGGGAGGGCTTGGAGTTCTATGTGGAAGAGTAAGAACTTTTCGATTTACCAGTGTTAA 2307 0.4608 MDIAEVEESLFAATDAKLHGGMCRIFSAIVCKVLGIFPVLEAARPRSKSGIQALCSLHVALEKAKNLLQHCSDCSKLYLAITGDSILLKFEKARSALEDSLRRVEDIVPESIGCQISEIVNELEVTVFSLDPSEKQVSDEIIALLQQERKFNNNCNDNNELETFHKAASRLGITSSRAALTERRALKKLIERARAEEDKRKESIVAYLFHLMRKYSKLFRSEFSDDNDSQGSAPSSPTVQGSFEEYSGLGANGQAFERQLSKLSSFNFKPSGTKSGQMPVPPEELRCPISLQLMYDPVIISSGQTYERVCIEKWFSDGHSTCPKTKQKLAHLCLTPNYCVKGLIAGWCEQNCVIVPDAPPGSLDLNYWRLAISECESTNSRSMESISCCKLKGVKVVPLEESGITEEIKGNEIRDVSGQEDCEVDMFERYESLLAILCGGEDIRRQCKVVEQIRFLLKDDEEARILVGANGFVEALVRFLSSSVHEGNEKAQEIGAMALFNLAVNNNRNKEKMLSAGVIPLLEEMILNLNSYESATALYLNLSCLEEAKTIIGSSMAVSFLVQLLQTNSTPQCKLDALHALYNLSTHSSNVSHLLSAGIIEGLQALLTGPMDHTYAEKSIAVIINLISNKSGKEGIISTPGLISGLVAILDTGEPVEQEQAVLCLFILCNGSEKCSDMVLQEGAIPALVSISVNGTTKGKEKAQKLLMLFREHRQRDPSPVRMQQQHENSDESPAAPESKPLCKSTSKKTGRAWSSMWKSKNFSIYQC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00241 768 SUPERFAMILY RING/U-box 276 357 - -
Eupl11g00241 768 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Eupl11g00241 768 Gene3D - 639 709 IPR011989 -
Eupl11g00241 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 517 IPR000225 GO:0005515
Eupl11g00241 768 Gene3D - 431 638 IPR011989 -
Eupl11g00241 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Eupl11g00241 768 Coils Coil 176 196 - -
Eupl11g00241 768 MobiDBLite consensus disorder prediction 714 754 - -
Eupl11g00241 768 CDD RING-Ubox_PUB 282 334 IPR045210 -
Eupl11g00241 768 PANTHER U BOX DOMAIN-CONTAINING 23 715 - -
Eupl11g00241 768 SUPERFAMILY ARM repeat 431 712 IPR016024 -
Eupl11g00241 768 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Eupl11g00241 768 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Eupl11g00241 768 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Eupl11g00241 768 SMART arm_5 460 504 IPR000225 GO:0005515
Eupl11g00241 768 SMART arm_5 506 544 IPR000225 GO:0005515
Eupl11g00241 768 SMART arm_5 545 586 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00241 Eupl-Chr11 3102378 3108666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00241 1 767 U-box Gene Family AT1G24330 64.639 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00241 - - nnu:104592926 1186.79