Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00225 ATGGTGAAGTATTCGAGGGAGCCTGATAACTCGACCAAGTCCTGCAAGGCCAGGGGGTCGGATCTTCGAGTTCATTTCAAGAACACTAGGGAGACAGCGTTCGCAATCAGAAAGTTGCCTTTGGTCAAAGCCAAGAGGTATTTGGAGGATGTTCTGGTTCATAAACAAGCCATTCCCTTCCGACGATTCTGTAGGGGTGTTGGTCGAACTGCCCAAGCAAAGAACCGTCATTCAAATGGACAAGGACGCTGGCCAGTTAAATCTGCAAAATTCATTCTGGATTTGCTTAAGAACGCAGAGAGCAATGCTGATGTGAAAGGCTTGGATGTGGATTCACTTTTTGTCTCACACATCCAAGTAAACCAAGCCCAGAAGCAGAGGCGTAGGACGTACCGCGCCCACGGAAGAATCAACCCCTACATGTCATCTCCTTGCCATATTGAGTTGATTTTGTCCGAGAAGGAAGAACCAGTCAAGAAGGAGCCCGAGACTCAGTTGGCTCCTAGGAAAACGAAGAAGGCTTTACGAAGTGGTGCATCCTCTTGA 546 0.4817 MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLVHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADVKGLDVDSLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRKTKKALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00225 181 MobiDBLite consensus disorder prediction 153 181 - -
Eupl11g00225 181 MobiDBLite consensus disorder prediction 153 170 - -
Eupl11g00225 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Eupl11g00225 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Eupl11g00225 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Eupl11g00225 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Eupl11g00225 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Eupl11g00225 181 FunFam 60S ribosomal protein L17 1 175 - -
Eupl11g00225 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Eupl11g00225 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00225 Eupl-Chr11 2884543 2889871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00225 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 1.13e-116 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00225 K02880 - ming:122078297 341.273