Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00171 ATGGGGAGAGGAAAAGTAGAGCTGAAGAGAATCGAGAACACAACGAGCAGGCAGGTCACCTTCTCTAAGCGACGAAGTGGTCTTCTCAAGAAAGCTTTTGAGCTCTCTATCCTCTGTGATGCAGAAGTCGCTCTTGTTATCTTCTCTCCTACTGGGAAAGCTTACCAGTTCGCTAGTCACGACATAGACAGGACCATCGGGAGGTATCGCAGTGAAGTAGGATTGCCTGAATCACTGAATCAACGTACCAGAACTATTGAGTTTTGGAGGACGGAAATTGACAACTTAAAGAAATCAATCGACACATTGGAGGCAAGACATAAGCATTTGGCTGGAGAAGATCTATTTTCCTTGGGCACGAAAGAGTTAAAGCAACTGGAACGACAATTGAAGACTGGAGTCGAACGAATCCGCTCCAAAAAGAGGCGTATAATCTCGGAGCACATCAACTTGTTGAAGAGAAGGCAAAGAGTTCTGCAAGATGAGAACGCTCATCTCCAAAGAAGGCTGCATGATGCCGATGCTAATTGGAGAAGTTTGGGAGGAGGCGATACGGGTGCTACATTTTCAAGGGTTGGTCATGTCAAGGATGGAGCCCACACCTAA 606 0.462 MGRGKVELKRIENTTSRQVTFSKRRSGLLKKAFELSILCDAEVALVIFSPTGKAYQFASHDIDRTIGRYRSEVGLPESLNQRTRTIEFWRTEIDNLKKSIDTLEARHKHLAGEDLFSLGTKELKQLERQLKTGVERIRSKKRRIISEHINLLKRRQRVLQDENAHLQRRLHDADANWRSLGGGDTGATFSRVGHVKDGAHT* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00171 201 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Eupl11g00171 201 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Eupl11g00171 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Eupl11g00171 201 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl11g00171 201 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl11g00171 201 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Eupl11g00171 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 Coils Coil 123 143 - -
Eupl11g00171 201 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Eupl11g00171 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 Coils Coil 86 113 - -
Eupl11g00171 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl11g00171 201 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00171 Eupl-Chr11 2305142 2311179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00171 1 173 MADS-box Gene Family AT3G58780 44.886 1.99e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl11g00171 K-box 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00171 K09264 - qsu:112006468 270.781