Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00167 ATGGCTGGAAAGCTCAAACCAGTTTCTTCTGCTCCAGTTGTCTGGATGATAAGGAGAGGAAAGGGGAAGGAAGAAGAGAGAATAGACGAAGAAGAAAAAGAACAGAAGCGGAAAGGTTTTATGGACTGGGACATAAAGACAGCTTCTTGGGATTTTGCAGAATTTGAGCGAGAAGCCGACCCCAGCATCGCCCCCATCATTGGGTTGAGTAGCTTAGGAGGAGGGCCGAAGACTAAAGGGGATTGCTCGGTTGATTTGAAGCTTGGGAGGTTGGGGGATTTTGGGGACAGGTCGATAGACAAGTGGAAGGATCCAAGGGTCTTGACGATGGTGTCATCATCATCAGGTTCATTGAAGAGGACTCGGGGCCCTAGTAATGGATCCCAGATTGCGTCGTGCTTGGTCGATGGCTGCAATTCGGACCTTAGCAAGTGCAGGGATTATCACAGGCGCCATAAGGTCTGTGAGGTCCACTCTAAGACTCCGAAGGTGATGGTCGGTGGTCAGGAGCAACGGTTCTGCCAGCAGTGCAGCAGGTTCCACTTGTTGGTGGAATTTGATGAAGTAAAGAGGAGCTGTAGGAAGCGTCTTGATGGACACAACCGGCGTCGACGGAAGCCTCAGCCAGAATCCTTGTCCATGCATTCTAGAAGTTTGTTCGCCAATCACCAAGGTACCAGGCTATTGCCATTCGCTAATCAACAAATGTTTCCATCATCAACTACTGTGGTGAGCCCCTCTTGGACTGGTGTCCTCAAAACTGAGGATGATACTACACTTAATAGCCGCCATCTGTCATTGCACTTCGTTGACAGACAAAGCATGTTTCCAGGATCCTTCTCACGTAGCTTCAGAGGGAAGCAAATCCCTTTCTTGCAGGGAAACGATCCTGCACTCGGCAATCGACTGGCCCCTGAAGCTTCTGTCTGCCAGCCACTTCTCAATAACATTGCCTTATCAGAAAGAAGTGCGACTGGCAGGAAAATGTTCTCTCATGGTTTAACTCGAGTCCTTGACTCTGATTGTGCTCTCTCTCTTCTGTCATCATCGCCGACTCAAACTTCAGGGATCAGTCTTAGCCACATGGTGCAGACTGACTCAATCCCCATGGCACAGCCCCTAGTGCCAGGCCTGCAGTACAATTGTCTTGGAAGGTACCAATCACAGGGAATGGAAGATGAGCCAGTTGGTTCAGTTTTGGTTTCCGATGCCAGTGATCCCGAGCTCCATTGCCAGGGGATCTTTCATGTGGGGTCGTCAGAAAATGGGGCTCCGCAAACACTTCCTTTCTCTTGGGAGTAG 1302 0.4992 MAGKLKPVSSAPVVWMIRRGKGKEEERIDEEEKEQKRKGFMDWDIKTASWDFAEFEREADPSIAPIIGLSSLGGGPKTKGDCSVDLKLGRLGDFGDRSIDKWKDPRVLTMVSSSSGSLKRTRGPSNGSQIASCLVDGCNSDLSKCRDYHRRHKVCEVHSKTPKVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQPESLSMHSRSLFANHQGTRLLPFANQQMFPSSTTVVSPSWTGVLKTEDDTTLNSRHLSLHFVDRQSMFPGSFSRSFRGKQIPFLQGNDPALGNRLAPEASVCQPLLNNIALSERSATGRKMFSHGLTRVLDSDCALSLLSSSPTQTSGISLSHMVQTDSIPMAQPLVPGLQYNCLGRYQSQGMEDEPVGSVLVSDASDPELHCQGIFHVGSSENGAPQTLPFSWE* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00167 433 Pfam SBP domain 133 206 IPR004333 GO:0003677
Eupl11g00167 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 384 IPR044817 GO:0003677
Eupl11g00167 433 FunFam Squamosa promoter-binding-like protein 14 124 194 - -
Eupl11g00167 433 SUPERFAMILY SBT domain 131 212 IPR036893 GO:0003677|GO:0005634
Eupl11g00167 433 Gene3D - 123 194 IPR036893 GO:0003677|GO:0005634
Eupl11g00167 433 ProSiteProfiles Zinc finger SBP-type profile. 130 207 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00167 Eupl-Chr11 2276260 2281410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00167 41 433 SBP-box Gene Family AT5G50670 40.482 3.48e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl11g00167 SBP 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00167 - - nnu:104591759 565.844