Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00105 ATGGCAGCCTTTTCGTACCAACACCCCCCTTTTCTTCTTGACTCGGTTTTCTTTCCGAATCCGAACACACCCACTAAGCTATCTGGTTTATTGGAGGAAGGAGTCGTCCCCAACACTTCTTGTCTTTCTTGTTACTCTTCTGAACCTCTTCAAGATATTCCAGTTTATGTTAGTGATAATGAGACATCTGTGACTGAAAAATACAAAAACAATTCTTCATCCATCGTTATGGAGCTGGAAGGTGGTGATCAAGTCAGTCAAAAAACCCCAATGGAGAAAAAGAGGAAGAACACAGATGGGTCTTGCTTGAGTTTTTCTCAATCCAAGGATGGGAAGGAATCTAAAGCCAAGAAACAAAAGAAATTCAGTGGAAGCTTGAAGAAAAGGGAAGAGAAGAATCAGAAGAAAGTCCCTGAAGAGTCCCCAACTGGCTACATTCATGTAAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCAGAAAGGGTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTGTTGCAAGATCTTGTTCCTGGTTGTGACAAGGTGACTGGTAAGGCCCTTATGTTGGATGAGATAATCAACTATGTCCAGTCCCTACAGAATCAAGTAGAGTTCCTCTCTATGAAGCTTGCTTCTGTGAACTCAGTGTTCTATGACTTTGGGGTAGACTCTGATGCATTCCTTGTTAAATCAGAGAAAATGAGTAGCTTGGCATCACTACCATTGCCATCTATGCAACAATCCATACCTTTTGCAGACACTTCAATAAATAACTACCCTCTTCTGGACAATTCAGTTTCTTTTTTATTTCAACTGGAGCAGAGGACCAATGCCTTCTATCAGGATAATGAAAATCTATCATGGTATGTGGATGAACAGAGACAAAGGTTTATTAATCAATTGGGGTTCAACAACTTGTGTTCTTTCCAATAA 948 0.4093 MAAFSYQHPPFLLDSVFFPNPNTPTKLSGLLEEGVVPNTSCLSCYSSEPLQDIPVYVSDNETSVTEKYKNNSSSIVMELEGGDQVSQKTPMEKKRKNTDGSCLSFSQSKDGKESKAKKQKKFSGSLKKREEKNQKKVPEESPTGYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNSVFYDFGVDSDAFLVKSEKMSSLASLPLPSMQQSIPFADTSINNYPLLDNSVSFLFQLEQRTNAFYQDNENLSWYVDEQRQRFINQLGFNNLCSFQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00105 315 Gene3D - 151 222 IPR036638 GO:0046983
Eupl11g00105 315 MobiDBLite consensus disorder prediction 80 161 - -
Eupl11g00105 315 MobiDBLite consensus disorder prediction 110 138 - -
Eupl11g00105 315 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Eupl11g00105 315 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 249 IPR024097 GO:0006355
Eupl11g00105 315 CDD bHLH_AtBPE_like 144 230 - -
Eupl11g00105 315 FunFam Basic helix-loop-helix transcription factor 151 223 - -
Eupl11g00105 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Eupl11g00105 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 219 IPR036638 GO:0046983
Eupl11g00105 315 SMART finulus 160 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00105 Eupl-Chr11 1416805 1419130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00105 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 46.237 8.41e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl11g00105 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00105 - - vvi:100268131 350.517