Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00088 ATGGCTTCTTCAGAGGATTTGAATAAAGGAAATTGCTGTATCGGCCTTGGAGAGAGCTTCTCTTCAGGTTGTAGTGAGCCTAACGATGGCGGAGTCGCTAGGAATGGTATTGCAGAGGCGCCGAGAGGGTATTCTGGTTTTTCGGCTGCCGGAAAAGATTCGGAAGACGCGCTTTACACAGAGCTTTGGCATGCTTGTGCTGGTCCTCTTGTGACGGTTCCGCGCGAAGGAGAGCGAGTTTTCTATTTCCCTCAGGGACATATCGAGCAGGTTGAAGCGTCAACGAATCAGGTGGCTGATCAGCAGATGCCGCTCTATAATCTTCCGTCGAAGATCCTCTGCCGTGTGATTAACGTCCATTTGAAGGCTGAGCCAGACACCGACGAGGTGTTTGCACAAGTGACTTTACTTCCTGAAACGATTCAAGACGAGCACTCTGTGGAGAAGGATTCTGTGCCCCCTCCCCCACAACGCCCTCTTGTACATTCCTTTTGTAAGACTTTGACCGCCTCTGATACAAGCACCCACGGTGGATTCTCTGTGTTGAGACGGCATGCAGACGAATGCCTACCCCCACTGGACATGTGCCGGCAACCTCCAACTCAGGAGTTGGTAGCCAAGGATTTGCATGGAATTGACTGGCGATTCCGCCACATCTTTCGGGGTCAACCAAGGAGGCACCTCCTTCAAAGTGGTTGGAGCGTCTTTGTTAGCTCCAAAAGGCTTGTTGCAGGGGATGCTTTTATTTTTTTAAGAGGTGAAAATGGGGAACTTCGAGTTGGGGTAAGACGTGCTATGAGACAGCAGGCTAATATTCCATCCTCGGTCATATCTAGTCACAGCATGCACCTTGGTGTCCTTGCAACTGCATGGCATGCTGTATCGACAGGAACCTTGTTCACTGTCTATTACAAACCCAGGACAAGCCCTGCTGAGTTTATCGTTCCGTTTGATCAATATATGGAGTCCATTAAGAATAACCATTCTATTGGGATGAGGTTCAAGATGAGGTTCGAAGGTGAAGAAGCTCCAGAGCAGCGGTTTACAGGCACAATAGTTGGAATTGGTGATGCTGATCCTGAGAGGTGGTCTGGATCAAAATGGAGATGCCTCAAGGTGCGATGGGATGAAAATTCTTCTGTTCCTCGTCCAGAGAGGGTTTCTCCTTGGAAAGTAGAACCTGCCTTGACTGCTCCTGCACTGAATCCCCTTCCAGTGCCCAGGTCAAAAAGGCCCCGTGCAAACATGCTGCCATCATCTCCTGATTCCTCTATTCTTACAAGAGAAGGTTCATCTAAAACCACAGCAGACCCTTCACCAGTAAATGGGTTTTCGAGGGTCTTGCAAGGTCAAGAAATCTCGACCTTGAGAGGCACTTTTGCTGCAAATAATGCATCAGACACTGTTCAAAAGCCCACCGTATGGCAGCCTTTGCAAGATGATGAGAAGATAGATGGTTTTTCTAGTCAGAGAAGATTTAGATCAGAGAACTGGGTGCCTTTAGTGAAGTATGAGTCAACATATACAGATCTGCTAGCGGGCTTCCAAACCTCCAATGACACCCCTCATGGGTTCTGTCCCTCTTATGTTGACCAGGTGCCAAATGATGTTAACCCAATGAAGAAGCATTTTCCGGACCAGGAAGGCAAATTCCCATGGTCTCTTATGCCCTTGAGCCCCTCATTAAACATGTCAGACTCTAGCATGAAGATTCCTGCCCATGCTGGTCAAATACTTTATCATAAACCAGGCACTGTTGGATATGGTGGGTTGAGTGGGTATCCAGTGCTACAGAGTATGAGAGTTGAGCAGCACCCAGGAAACTGGTTGATGCCCCTGCTTCCGCCTTCTCATTCGGAGACTCTGCCTCATCCAAGAGGGGTAAGACCACAACCTGCCTTTTTACCGCAACGTGAGGCTGTGAAATCGAAAGGTGATGGTAACTGCAAGCTCTTCGGTATTCCCCTCATAAGCAACCCAGTGGTAACGGAACCATCACTGTCACATACAAATATGGCATACGAGCCAGAAGGTCAAGTCCACCCTCTGTTGCACCACCCCCATGTTTCGGAATCTGACCAGCAGTCGGAGCAATCGAAGGGCACGAAATCGGCAGATACTGCTGTTGTGGGTAATGAGCAGGAGAAACCTTTTCAAGCTTGTCGGCAGCATTCTAGAGATGTTCAGAGCAAACTTCAGGGTGGTTCTACCCGTAGTTGCACTAAGGTTCACAAGCAGGGGATTGCTCTTGGGAGGTCTGTCGATCTTACCAAATTCAACTGCTATGATGAACTGATCACTGAGTTAGACCAGATGTTTGAATTCAATGGTGAATTGATGGCTCAGAACAAAAGTTGGCTGATTGTGTATACTGACAATGAGGGTGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAATTCTGTAGCATGGTTCGCAAGATCTTCATCTATACAAGGGAGGAGGTCCAGAGGATGAACCCAGGGACTTTGAACCCGAAAGCTGATGAAAATCCAGTCATTTTAGAGGAAAAACCTGGTGCAAACGAAACAAAATTTCCGCTGCTTCCAACGGCAGCTAGTCCTGAGAACTGCTAG 2598 0.4823 MASSEDLNKGNCCIGLGESFSSGCSEPNDGGVARNGIAEAPRGYSGFSAAGKDSEDALYTELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQQMPLYNLPSKILCRVINVHLKAEPDTDEVFAQVTLLPETIQDEHSVEKDSVPPPPQRPLVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMCRQPPTQELVAKDLHGIDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVSTGTLFTVYYKPRTSPAEFIVPFDQYMESIKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGIGDADPERWSGSKWRCLKVRWDENSSVPRPERVSPWKVEPALTAPALNPLPVPRSKRPRANMLPSSPDSSILTREGSSKTTADPSPVNGFSRVLQGQEISTLRGTFAANNASDTVQKPTVWQPLQDDEKIDGFSSQRRFRSENWVPLVKYESTYTDLLAGFQTSNDTPHGFCPSYVDQVPNDVNPMKKHFPDQEGKFPWSLMPLSPSLNMSDSSMKIPAHAGQILYHKPGTVGYGGLSGYPVLQSMRVEQHPGNWLMPLLPPSHSETLPHPRGVRPQPAFLPQREAVKSKGDGNCKLFGIPLISNPVVTEPSLSHTNMAYEPEGQVHPLLHHPHVSESDQQSEQSKGTKSADTAVVGNEQEKPFQACRQHSRDVQSKLQGGSTRSCTKVHKQGIALGRSVDLTKFNCYDELITELDQMFEFNGELMAQNKSWLIVYTDNEGDMMLVGDDPWQEFCSMVRKIFIYTREEVQRMNPGTLNPKADENPVILEEKPGANETKFPLLPTAASPENC* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00088 865 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 827 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl11g00088 865 FunFam Auxin response factor 733 827 - -
Eupl11g00088 865 FunFam Auxin response factor 327 399 - -
Eupl11g00088 865 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Eupl11g00088 865 Gene3D - 161 266 IPR015300 -
Eupl11g00088 865 CDD B3_DNA 162 264 IPR003340 GO:0003677
Eupl11g00088 865 MobiDBLite consensus disorder prediction 399 444 - -
Eupl11g00088 865 Gene3D - 734 827 - -
Eupl11g00088 865 FunFam Auxin response factor 162 266 - -
Eupl11g00088 865 ProSiteProfiles PB1 domain profile. 738 822 IPR000270 GO:0005515
Eupl11g00088 865 SUPERFAMILY DNA-binding pseudobarrel domain 160 293 IPR015300 -
Eupl11g00088 865 SUPERFAMILY CAD & PB1 domains 739 815 - -
Eupl11g00088 865 SMART B3_2 164 266 IPR003340 GO:0003677
Eupl11g00088 865 MobiDBLite consensus disorder prediction 842 865 - -
Eupl11g00088 865 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Eupl11g00088 865 MobiDBLite consensus disorder prediction 416 444 - -
Eupl11g00088 865 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl11g00088 865 Pfam AUX/IAA family 725 823 IPR033389 -
Eupl11g00088 865 Gene3D - 327 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00088 Eupl-Chr11 1170752 1177171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00088 1 843 B3 DNA Binding Superfamily AT5G62000 62.485 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl11g00088 AUX_IAA 7.7e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00088 - - ming:122079448 1324.3