Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00085 ATGCCATCTAAAGTAATGGATCAAAGGAGTTTGTCTCCTTCATCGTACTTCCATGAGGAAATCCGTTTTTCGGCTGAGAGGCAAGTTGGATTTTGGAAGCCTGATAGTATGTCTGATCACCACGGAGTAGAAATGAATGGAATGTCACGAACATCAGAAAGCAAGTCAGTTGCGTCATCATCAATGGAGAATTTTTTACCATTAGCAGCACAGTCCGGGGAGTCCTTGAAATTTCCTCAGCCTTATCTAGTCAGAGACCAGAAAGTCAAGCCTAACCTAGAGAGGCACGTGGTGGGAGCAGAGAGAATGACCAATCTGTCCGTGACTTCTTGGAGATCTATAAACCACCACAATCTAGGAACGAGGTCAAACATATTTGTGCAGCCGGCATCTTATTTTGTTGAAGGCAACAACAATGTTGATATGAGTGAGGCCCAATATGAGAATGGTCTCTTCTCGAGCTCCTTGTCAGAAATATTTACTAGAAAATTGAGATTATCATCAAATAATGGTCTATTTGGCCAGTCTGTTGATGCTGTGACCTCCCACTACGAGGAAGAGGAGCCTTTTGAATCCCTTGAAGAAATTGAGGCACAGACAATCGGGAACCTACTTCCTGATGACGACGATTTGCTTGCTGGAATGATTGATGAACTTGAGTATATTGCTCACCCCAATAGAGGAGACGATGTAGAAGATTTTGATCTGTTCAGCAGTGGCGGAGGGATGGAACTAGAAGGAGATGATAGTTTAAGTTCCTGTGGGGGCCAAAGAAATTCAGATTTTGCTGGGGGAAGTTCTAATGGTCAGCAGGGGGGATTGAATAGTTCAAATGCTGGGGAACACCCTTATGGTGAACACCCTTCGAGAACACTTTTTGTGAGAAATATTAATAGCAACATCGAAGATTCTGAGTTAAGGGTTCTTTTTGAGCAATATGGAGATATCCGCACTCTTTATACGGCCTGCAAGCATCGTGGTTTTGTTATGATTTCTTATTATGATTTAAGGGCAGCGCGCAATGCAATGAAAGCTCTTCAAAGCAAGCCGTTGAAACGTAGGAAGCTAGACATACACTTTTCAATTCCAAAGGATAATCCTTCAGAGAAAGATATTAACCAGGGCACCCTTGTGGTATTCAATCTCGATTCTTCTGTTTCAAATGATGGTCTTCGTGAGATCTTTGGTGTTTATGGAGAAATTAAGGAGATTCGTGAAACTCCTCACAAGCGCCATCATAAATTCATAGAGTTCTACGATGTTAGAGCTGCTGAAGCTGCTCTTCGTGCATTGAATAGGCGTGATATTGCAGGGAAGAGGATCAAACTCGAACCAAGCCGCCCGGGTGGTGCAAGACGGGGTTTGATGCAACAGTTTTCACCAGAGCTGGAGCAAGAGGAAACCAATGTGTGTCGGCAACAGGGAAGCTCTCCTAATAACTCACCACCCGAATGCTTTGGACCAGTTTCACATGGGGCAATAACATCTAGTTGCATGGAAAGTGAAGCTGTCCAGGCTCTACACCCTGCCATTCGAGCACCTATTGGTCCATTCATGGAAAGTGAGTTCCAACACAGGATATCTTCTGGTGTTCCAAATAGCTTTCCCTTGCCGGCGAGGGTTGCATCAGTTGGCAATCAATCTGGACGTGGTGAGCCCAGTCATTCACTGGGCCAGATGGAGTTTGGTTTCCAACGCATGCCAACTTTTCATCCTCATTCGCTTCCAGAGTTTCATGATGGTTTAGCCAGTGGTGTTCCTTACAACTCTCCTGGCACCATGGCAGCAAACATCAGTCCCAGACCATCAGAAGGAATCGATAACAAGCATATCCGCAGAGGAGGCACAAATGGGCACCCAATTGAGTTTAATGAAGGAGTTTTTGGTTCTTCTGGAAATGGGGGCTGCCCTCTCCATGGGCATCGTTATGTGTGGAGTAACTCAAACTCATATCACCCTCATCCTCCAGGCCCCATGATGTGGCCAAATTCTCCATCATTTGTCAATGGTGTTCGTCCTCATCACCCAACACAACTTCATGGACTTCCTAGAGCGCCATCTCATATGCTGAACACCGTTTTACCTATGCAACACCACCATGTGGGATCGGCACCGGCCATTAATACCTCTCTGTGGGACAGGCGACATTCCTACACAGGGGAGTCCCCTGAGACATCAGGTTTCCACCCAGGCTCTCTCGGTAATATGGGATTTTCCGGCAGTTGTACATTACATCCTCTGGAACTTGCTTCTCATAACATCTTTCCTCATGTTAATGGAAACTGTATGGACGCACCAATTCCCTCTACAAACATTGGACTGCACTCCCCTCAGCAGAGGTGCCACATGTTCCCTGGCAGAAACCCAATGATCCCTATGCAGAACTCATTCGATGCTCCTACTGAGCGGGTTAGAAGCCGCAGGAACGAAGCCAGTTCCAATCAGGCTGACAACAAGAAACAGTATGAACTCGATATTGACCGCATATTGCATGGGGAAGACACCCGAACAACTCTTATGATAAAGAACATTCCTAACAAGTACACTTCGAAGATGCTTTTGGCTGCGATTGATGAACTCCATCGAGGAACTTACGATTTCATTTATTTGCCAATTGACTTTAAGAACAAATGCAATGTTGGTTATGCATTCATCAACATGATTGACCCTCTCCAGATCGTTCCGTTCTACCAGGCATTCGATGGCAAGAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCATCACTTGCGTATGCTCGGATCCAGGGGAAAGCTGCTCTCATTGCCCATTTTCAGAATTCGAGTTTGATGAACGAGGATAAACGATGCCGCCCTATTCTATTTCATTCCGATGGCCCAAATGCAGGAGATCAGGAGCCATTTCCAATGGGGATCAATATCCGATCTAGACCTGGCAAACCCCGGACCAATGGTAGTGAGGAGAACCATCACGGAAGCCCATCAACCTCTGCAAACGTGGAGGAATCTTCCAATGGCACGGACTTTACGTTAGGTTCTGCAAAGGACTCAGAGTGA 3036 0.4578 MPSKVMDQRSLSPSSYFHEEIRFSAERQVGFWKPDSMSDHHGVEMNGMSRTSESKSVASSSMENFLPLAAQSGESLKFPQPYLVRDQKVKPNLERHVVGAERMTNLSVTSWRSINHHNLGTRSNIFVQPASYFVEGNNNVDMSEAQYENGLFSSSLSEIFTRKLRLSSNNGLFGQSVDAVTSHYEEEEPFESLEEIEAQTIGNLLPDDDDLLAGMIDELEYIAHPNRGDDVEDFDLFSSGGGMELEGDDSLSSCGGQRNSDFAGGSSNGQQGGLNSSNAGEHPYGEHPSRTLFVRNINSNIEDSELRVLFEQYGDIRTLYTACKHRGFVMISYYDLRAARNAMKALQSKPLKRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDSSVSNDGLREIFGVYGEIKEIRETPHKRHHKFIEFYDVRAAEAALRALNRRDIAGKRIKLEPSRPGGARRGLMQQFSPELEQEETNVCRQQGSSPNNSPPECFGPVSHGAITSSCMESEAVQALHPAIRAPIGPFMESEFQHRISSGVPNSFPLPARVASVGNQSGRGEPSHSLGQMEFGFQRMPTFHPHSLPEFHDGLASGVPYNSPGTMAANISPRPSEGIDNKHIRRGGTNGHPIEFNEGVFGSSGNGGCPLHGHRYVWSNSNSYHPHPPGPMMWPNSPSFVNGVRPHHPTQLHGLPRAPSHMLNTVLPMQHHHVGSAPAINTSLWDRRHSYTGESPETSGFHPGSLGNMGFSGSCTLHPLELASHNIFPHVNGNCMDAPIPSTNIGLHSPQQRCHMFPGRNPMIPMQNSFDAPTERVRSRRNEASSNQADNKKQYELDIDRILHGEDTRTTLMIKNIPNKYTSKMLLAAIDELHRGTYDFIYLPIDFKNKCNVGYAFINMIDPLQIVPFYQAFDGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHSDGPNAGDQEPFPMGINIRSRPGKPRTNGSEENHHGSPSTSANVEESSNGTDFTLGSAKDSE* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00085 1011 Gene3D - 277 374 IPR012677 -
Eupl11g00085 1011 SUPERFAMILY RNA-binding domain, RBD 287 450 IPR035979 GO:0003676
Eupl11g00085 1011 PANTHER RNA RECOGNITION MOTIF-CONTAINING 55 1000 - -
Eupl11g00085 1011 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 356 IPR000504 GO:0003723
Eupl11g00085 1011 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 442 IPR000504 GO:0003723
Eupl11g00085 1011 CDD RRM3_MEI2_like 839 924 IPR034454 -
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 246 287 - -
Eupl11g00085 1011 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 363 IPR000504 GO:0003723
Eupl11g00085 1011 SMART rrm1_1 291 359 IPR000504 GO:0003723
Eupl11g00085 1011 SMART rrm1_1 838 914 IPR000504 GO:0003723
Eupl11g00085 1011 SMART rrm1_1 376 444 IPR000504 GO:0003723
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 947 1011 - -
Eupl11g00085 1011 FunFam Protein MEI2-like 1 374 469 - -
Eupl11g00085 1011 Gene3D - 375 462 IPR012677 -
Eupl11g00085 1011 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 448 IPR000504 GO:0003723
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 252 278 - -
Eupl11g00085 1011 SUPERFAMILY RNA-binding domain, RBD 838 923 IPR035979 GO:0003676
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 796 818 - -
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 981 1011 - -
Eupl11g00085 1011 CDD RRM1_MEI2_like 289 365 IPR034453 -
Eupl11g00085 1011 MobiDBLite consensus disorder prediction 801 818 - -
Eupl11g00085 1011 FunFam MEI2-like protein 5 isoform 2 279 373 - -
Eupl11g00085 1011 Pfam RNA recognition motif 2 836 932 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00085 Eupl-Chr11 1131144 1141684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00085 285 459 Eukaryotic Initiation Factors Gene Family AT3G16380 26.020 1.62e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00085 - - ming:122077009 1588.55