Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00077 ATGCATTTCGCGAAGCTGGACGATTCTCCGATGTTTCGAAAACAAATTCAATCCCTCGAGGAAAGCGCTGAATCATTGAGAGAGAGAAGTCTAAAGTTTTACAAAGGATGTCGAAAGTACACAGAAGGTCTTGGGGAGGCTTATGATGGGGATATCGCTTTTGCAAGTGCCCTTGAAGCATTTGGAGGAGGGCATAATGATCCTGTTAGTGTTGCTTTTGGAGGTCCTGTTATGACCAAATTTACAATTGCTTTGAGAGAAATTGGGACATACAAGGAAGTTCTTCGGTCCCAGGTTGAACACATGCTAAATGACAGGTTGCTGCACTTTGTCAACATTGACTTGCATGATGTTAAGGAAGCCCGAAAGCGTTTTGACAAGGTTAGCCTTCATTATGATCAGGCTCGTGAGAAGTTTCTGTCTCTGAGGAAAGGCACAAAGATGGATGTAGCTACTGCCTTAGAGGAGGAACTTCACAATGCAAGGTCCACATTTGAGCAAGCTCGCTTCAACCTGGTTACTGCTCTTTCTAATGCTGAAGCAAAAAAGAGGTTTGAATTTTTGGAGGCTGTTAGTGGGACAATGGATGCTCATCTTCGTTACTTCAAACAGGGTTATGAGCTATTGCATCAGATGGAGCCTTATATTAACCAGGTCTTGACTTATGCACAACAGTCAAGAGAAAGATCCAACTATGAGCAGGCAGCTCTCACTGAAAGGATGCAAGAGTACAAAAGACAGATTGATCGAGAAAGTCGGTGGTCTTCAAATGGATCATATGGTTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTCATGCAATCTGCTTCAAAGGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAACGTTCATCAAACTTGAGAGGAGACTGGAAGAGAAGGTTTTTCGTTCTTGATAGCCGAGGAATGCTGTACTACTATCGCAAGCAATCGATCAAACCGTCCGGATCTGGGACTCCGCTTTCCAATCAGAGGAATCATAATCCTGAACTTGGTTCTGGGCTGCTGAGCCGGTGGCTTTCTTCCCATTATCATGGTGGTGTGCATGATGAGAAGTCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATAAAAGTTGATGCGGACCAATCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCATCAAAGAACTACACTTTGCAGGCAGAGAGTGCAATGGATCAAATGGACTGGATTGAAAAGATAACAGGAGTTATTGCTTCACTCCTGAGTTCCCAATCACCTGAGCAACATCTCCCTGCTAGTCCTATGGGCAGTGGTCATCACCACTCTGCTAGTGACAGTAGCTCATTCGAGAGTTCCTCTGATTTTGATCACTCAGCAATTGAAGAATACACGTCCGAGAGGAACTTTGTCACTGGACATCATGAACGTTCATCTAGAAGTTCGCAACAGCAATGGGTCAGTGTAAAAAGTGAGAAGCCAATTGATGTGCTGAGAAGGGTATGTGGAAACGATAAATGTGCTGATTGTGGTGCTCCTGAGCCAGACTGGGCATCCTTAAACCTTGGTGTTCTTATCTGCATTGAATGTTCGGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGGTAAGGTCACTGACGCTTGATGTGAAAGTCTGGGAGCCTTCTGTTATAACTTTGTTTCAGTCACTGGGTAATACATATGCTAACTCGGTCTGGGAGGAATTATTGCACCCAAGAAGTACTTTTCACGCTGATGACATCCCTACAAGTTTCTCTAAGTTTGATAAACAACTGCTTCCTATCAGCAAACCTAGTCATTCTGATCCTATTTCAGTAAAAGAGAAGTTCATTCATGCAAAGTATGCAGAAAAGCTTTTAATTTGCAAGCCAAGGGAGGATCAGCATTCTTTTTCTGTGGCCCAACAGATGTGGGACAGTGTCCGTTCCAATGACAAGAAAGCAGTTTACCGCCACATTGTTAACTCTGACACGGATGTCAATGTGCATGGTCAGGCATCATTTAGCACGTCTTTAACTCTAGCAAAAGTAATGCTGTTGCAAGAGCAGCCAAGCATCTCCCATGTCTCTAGCTGCTTAGCTGGGGATTCTTTGGACAAGGCCTCTGCGGCAAGCTCTTTGAACTCGGTTAGTATGAGTGAGGACCGGAATGTGGAGGAATGTCTTGAGGGCTGCTCCCTGCTTCACCTTGCTTGCCAAACTTCAGACATAGGCATGATAGAGCTCCTCTTACAGTATGGTGCCAACGTAAATGCTCCTGATTCAAGAGGCCAGACACCACTCCACCATTGTATTCTCCAAGGCCGAACCGTGTTTGCCAAACTGCTGCTCACAAGGGGAGCTGACCCAGGGGCTGTTGACAGGGAAGGTAAAACCCCCCTGCAGCATGCAGCAGAGTCCACCTTCAATGACGATGAGGTCCTCACTCTGTTAGCAGACACAAACAGATAA 2505 0.4467 MHFAKLDDSPMFRKQIQSLEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALEAFGGGHNDPVSVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHFVNIDLHDVKEARKRFDKVSLHYDQAREKFLSLRKGTKMDVATALEEELHNARSTFEQARFNLVTALSNAEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALTERMQEYKRQIDRESRWSSNGSYGSPNGDGIQAIGRSSHKMIEAVMQSASKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQSIKPSGSGTPLSNQRNHNPELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAESAMDQMDWIEKITGVIASLLSSQSPEQHLPASPMGSGHHHSASDSSSFESSSDFDHSAIEEYTSERNFVTGHHERSSRSSQQQWVSVKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLICIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNTYANSVWEELLHPRSTFHADDIPTSFSKFDKQLLPISKPSHSDPISVKEKFIHAKYAEKLLICKPREDQHSFSVAQQMWDSVRSNDKKAVYRHIVNSDTDVNVHGQASFSTSLTLAKVMLLQEQPSISHVSSCLAGDSLDKASAASSLNSVSMSEDRNVEECLEGCSLLHLACQTSDIGMIELLLQYGANVNAPDSRGQTPLHHCILQGRTVFAKLLLTRGADPGAVDREGKTPLQHAAESTFNDDEVLTLLADTNR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00077 834 ProSiteProfiles Ankyrin repeat region circular profile. 741 772 - -
Eupl11g00077 834 SMART arf_gap_3 502 647 IPR001164 GO:0005096
Eupl11g00077 834 Gene3D - 721 834 IPR036770 -
Eupl11g00077 834 SMART PH_update 293 431 IPR001849 -
Eupl11g00077 834 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Eupl11g00077 834 CDD PH_ACAP 295 433 - -
Eupl11g00077 834 Pfam Putative GTPase activating protein for Arf 505 637 IPR001164 GO:0005096
Eupl11g00077 834 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Eupl11g00077 834 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Eupl11g00077 834 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Eupl11g00077 834 ProSiteProfiles Ankyrin repeat region circular profile. 774 806 - -
Eupl11g00077 834 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Eupl11g00077 834 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 648 IPR001164 GO:0005096
Eupl11g00077 834 Coils Coil 151 171 - -
Eupl11g00077 834 CDD ArfGap 505 633 - -
Eupl11g00077 834 ProSiteProfiles Ankyrin repeat profile. 774 806 IPR002110 GO:0005515
Eupl11g00077 834 MobiDBLite consensus disorder prediction 435 464 - -
Eupl11g00077 834 Gene3D Arf GTPase activating protein 481 647 IPR038508 -
Eupl11g00077 834 CDD BAR_SFC_plant 14 215 IPR035670 -
Eupl11g00077 834 Gene3D - 285 443 IPR011993 -
Eupl11g00077 834 Pfam Ankyrin repeats (3 copies) 746 830 IPR002110 GO:0005515
Eupl11g00077 834 Pfam PH domain 294 428 IPR001849 -
Eupl11g00077 834 SUPERFAMILY ArfGap/RecO-like zinc finger 502 638 IPR037278 -
Eupl11g00077 834 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Eupl11g00077 834 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Eupl11g00077 834 Coils Coil 227 247 - -
Eupl11g00077 834 SMART ANK_2a 741 770 IPR002110 GO:0005515
Eupl11g00077 834 SMART ANK_2a 774 803 IPR002110 GO:0005515
Eupl11g00077 834 SMART ANK_2a 807 834 IPR002110 GO:0005515
Eupl11g00077 834 SUPERFAMILY Ankyrin repeat 740 829 IPR036770 -
Eupl11g00077 834 ProSiteProfiles PH domain profile. 292 429 IPR001849 -
Eupl11g00077 834 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 647 - -
Eupl11g00077 834 PANTHER CENTAURIN/ARF 3 831 IPR045258 GO:0005096
Eupl11g00077 834 Coils Coil 118 138 - -
Eupl11g00077 834 SUPERFAMILY PH domain-like 250 428 - -
Eupl11g00077 834 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Eupl11g00077 834 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Eupl11g00077 834 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00077 Eupl-Chr11 943094 987362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00077 514 588 C2H2 Transcription Factor Family AT4G21160 53.947 1.96e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00077 K12489 - nnu:104591852 1384.01