Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00072 ATGTCGGAGGAGAAAGAGGACGATAGCATCTTCCCGACTTATCCCTCCGTTCGATCCGAACAAGACATGTCTGCCATGGTATCGGCTCTTGCTCATGTTATCGGCACCAGTGCAGATGACAAACCTGCTCATCATCTGCAAGGAAATCATCAGTTACCCATGTCACAATCTGGCATGAGGGAACATGATCACCCATCAAAAGCGATGCAGGATCAAGGGAGCCTAAGAAGAAGACATTACAGAGGGGTAAGACAGAGACCTTGGGGCAAGTGGGCAGCTGAGATACGTGATCCAAAGAAGGCAGCACGAGTCTGGCTCGGCACGTTCGACACGGCTGAGGATGCAGCTGTTGCTTACGATGAAGCTGCTCTCAAGTTCAAAGGTACCAAAGCTAAGCTTAATTTCCCTGAACGAGTTCAAGGTAGGACTGAGTTGGGCTACTTCATCAGTACTCATCATGCTGAACGAGTTCCCGACTCAGTAGTAGTTCCACCTCCTCCTCCTCCTCCTTTCTCTCAGGACGCATACCCAGACCTTCTGCAGTACGCACAACTTCTTTGCAGTAAAGATGAAGATTTACAGCATGTAGCATCGGGTTTGTATAATCAAGAACCCTTTGTTTCACCAGCTTCTTCAGCTATGTTTTCATCGTCGTCGTCGTCGACATCGTCAACGGTAACATCACAACAGCGACAACAAGAGTTTCACATGTTTTCATCGCAGTTTCGAAATTCTTCTTCTTCTAGCTCTGAACTTCCTAAACATGGAAGGGACACGGATAGTACTCGCTCATCAAGAGAGTAG 804 0.4776 MSEEKEDDSIFPTYPSVRSEQDMSAMVSALAHVIGTSADDKPAHHLQGNHQLPMSQSGMREHDHPSKAMQDQGSLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAVAYDEAALKFKGTKAKLNFPERVQGRTELGYFISTHHAERVPDSVVVPPPPPPPFSQDAYPDLLQYAQLLCSKDEDLQHVASGLYNQEPFVSPASSAMFSSSSSSTSSTVTSQQRQQEFHMFSSQFRNSSSSSSELPKHGRDTDSTRSSRE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00072 267 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 MobiDBLite consensus disorder prediction 60 78 - -
Eupl11g00072 267 MobiDBLite consensus disorder prediction 211 267 - -
Eupl11g00072 267 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 MobiDBLite consensus disorder prediction 253 267 - -
Eupl11g00072 267 Gene3D AP2/ERF domain 78 139 IPR036955 GO:0003700|GO:0006355
Eupl11g00072 267 PANTHER DNA-BINDING DOMAIN 57 240 IPR044808 GO:0003700|GO:0009873
Eupl11g00072 267 MobiDBLite consensus disorder prediction 38 81 - -
Eupl11g00072 267 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Eupl11g00072 267 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Eupl11g00072 267 MobiDBLite consensus disorder prediction 211 252 - -
Eupl11g00072 267 FunFam Ethylene-responsive transcription factor 2 78 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00072 Eupl-Chr11 884942 886898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00072 9 161 AP2-EREBP Transcription Factor Family AT5G61890 56.209 3.57e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl11g00072 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00072 - - nnu:104592013 265.774