Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00069 ATGGCGCACAGTAGCCAACTCCCATGTGACGGAGACGGCATTTGTATGCTCTGCAAGAAAAAGCCCTCAGACGAAGAGAACCTCACCTGCAAAACCTGCGTTACACCTTGGCACGTTAGCTGCCTCTCTGCTCCTCCCGGAACCCTAGCTTCCACTCTCCAATGGGAGTGCCCGGATTGTTCTCCGGTTACTTGTGATGCTCCGGCGCGGGGCGTTGGTCAATCGGTTCTCTCCGGCGTATCTACACCTTCAGGTAATCTGATCGCTGCGATTCGAGCAATCGAAGCCGATGAATCGCTCACGGAGCAGGGGAAGGCGAAGAGGCGGCAGGAGCTTATGAGCAGAGGCGCTCGATCGCCAGATCTTGATGAGTCCAAATCGAAGAATAAGGAGAGGACGAACGGAGAGAGTGATGTTCTCGACCTTCTCGACGGGAGCTTGAACTGCTCGTTTTGTATGCAGTTGCCAGAGAGACCTGTTACGACACCTTGTGGGCACAATTTCTGCTTGAAATGCTTCCAGAAATGGATTGGTCAGGGGAAGCGGACCTGTGCGAAGTGCCGCAACACCATCCCTCCCAAGATGGCGAGCCAACCCCGAATCAACTCTGCCCTTGTGGTCGCCATTCGTATGGCCAGGATGTCGAAATCGATATCTACGGGGGGCCCGCTGAAAGTGTATCATTTCGTACACAACCAAAACCGACCTGACAAGGCATTCACCACAGAGCGGGCAAAGAGGGCTGGAAAGGCTAATGCATGCAGTGGGAAGATCTTTGTCACGGTTCCACCTGATCATTTTGGACCGATCCTTGCGGAGAACGATCCAGATAGGAAGCAGGGTGTGTTGGTTGGAGAGTGCTGGGAGGATCGGATGGAATGTAGGCAGTGGGGTGCCCACCTTCCCCATGTTGCAGGGATTGCCGGGCAGTCTGAACATGGTGCACAGTCGGTGGCCCTTTCCGGAGGCTACGAGGATGATGAGGATCATGGCGAGTGGTTCCTCTACACAGGAAGTGGGGGAAGAGATCTGAGTGGGAATAAACGCACAAACAAGGAGCAGTCCTTTGACCAGAAGTTTGAGAAAATGAATGAGGCGCTGCGACTCAGTTGCAGGAAAGGTTATCCAGTTCGAGTTGTGAGGTCCCACAAGGAGAAGCGTTCTTCCTATGCCCCAGAAATTGGGGTGCGTTATGATGGAATATACAGGATAGAGAAATGTTGGCGTAAAATTGGAATTCAGGGTTTTAAGGTATGCAGATATTTATTTGTTAGATGTGACAACGAACCTGCACCATGGACAAGCGATGAGCATGGGGACCGACCAAGACCTTTGCCTGTCATTAGTGAGCTAAAGAAGGCAACTGATGTCACAGAAAGGAAGGAAAGCCCATCTTGGGATCATGATGACGAAGGTGGCTGCTGGAAATGGAAAAAGCCTCCACCAATGAGCAGAAAACCAGTGGATTCTGCAAATCCAGAGGATAGAAAGAGAGCGAGGAGAGCTATAAGGCAAGCACAGAATTTATCTGTAAGAGAGAAGCTCCTGAAAGAGTTCAGCTGCCAAATCTGTCGGAAAGTGATGACTTTTCCTCTCACGACCCCCTGTGCGCACAACTTCTGCAAGGCTTGTTTGGAGGGTGCCTTTGCTGGTCAGACATTTGTGAGAGAGAGGAATTGCCAGGGGAGACGGATGCTCAGAGTGCAAAAGAATGTCATGAAGTGCCCTTCTTGCCCAAATGACATCTCTGACTTCCTTGAAAATCCACAGGTTAATAGAGAGTTGATGGATGTGATAGAATCTCTCCAAAGGAGTGAGGAGATTGCTGAGGAGAATGCTTCGGAGTCAGGCCAAGAAGAAACCGATGGCACAGAGAAGCTTGGAGGTGTGCTTGGAGATACTGAAGCTAGTACTGAAATTTTTGAAAAACTGGAAAGTGGCAACGATATAAAAAATAATCTAACTGAGAGCAAAACTAAGCAGATTTGCAAGCGGACAAAAATTGATGACGGGGATCTCTCGTCAAAGCCCAATGGTGGGGAGAACGAAAAATCTTCAGAGAAGAAATCTGATGCTGCGAATGGAGATGGAGATGGAGAAAATGGTACAGTAAATGCCAAAATGCCTGAAAGTGGCAAAAAAGACTTGCAAACTCCAACTGAGAGCAAACTTAGGCAGACTTACAAGCGGAAGAAAGCTAATGGTGGGGATTGTTTGTCAATGTCAGGTGGAGTGAAAACCAGGTCCATGAGAAAGAAATCTGAAGAGGTGGTAGATGAAGGAAATGTTTCACTGTCAAGTCCTCTCCATAAGGATTGTTTGTCAAAGCCAGGTGGAGTGAAGACCAGGTCAATGAGCAAGAAATCAGTGGTAGATGAAGGAAATATTTCACCGTCAAGCCCTCTCCATGTTCGATTGGATGACGATGACTTTGAATGA 2439 0.4904 MAHSSQLPCDGDGICMLCKKKPSDEENLTCKTCVTPWHVSCLSAPPGTLASTLQWECPDCSPVTCDAPARGVGQSVLSGVSTPSGNLIAAIRAIEADESLTEQGKAKRRQELMSRGARSPDLDESKSKNKERTNGESDVLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRNTIPPKMASQPRINSALVVAIRMARMSKSISTGGPLKVYHFVHNQNRPDKAFTTERAKRAGKANACSGKIFVTVPPDHFGPILAENDPDRKQGVLVGECWEDRMECRQWGAHLPHVAGIAGQSEHGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEIGVRYDGIYRIEKCWRKIGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVISELKKATDVTERKESPSWDHDDEGGCWKWKKPPPMSRKPVDSANPEDRKRARRAIRQAQNLSVREKLLKEFSCQICRKVMTFPLTTPCAHNFCKACLEGAFAGQTFVRERNCQGRRMLRVQKNVMKCPSCPNDISDFLENPQVNRELMDVIESLQRSEEIAEENASESGQEETDGTEKLGGVLGDTEASTEIFEKLESGNDIKNNLTESKTKQICKRTKIDDGDLSSKPNGGENEKSSEKKSDAANGDGDGENGTVNAKMPESGKKDLQTPTESKLRQTYKRKKANGGDCLSMSGGVKTRSMRKKSEEVVDEGNVSLSSPLHKDCLSKPGGVKTRSMSKKSVVDEGNISPSSPLHVRLDDDDFE* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00069 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 626 IPR013083 -
Eupl11g00069 812 SMART PHD_3 14 61 IPR001965 -
Eupl11g00069 812 SUPERFAMILY RING/U-box 514 604 - -
Eupl11g00069 812 SMART G9a_1 272 429 IPR003105 -
Eupl11g00069 812 SUPERFAMILY RING/U-box 141 195 - -
Eupl11g00069 812 ProSiteProfiles Zinc finger RING-type profile. 149 188 IPR001841 -
Eupl11g00069 812 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Eupl11g00069 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 665 695 - -
Eupl11g00069 812 ProSiteProfiles Zinc finger RING-type profile. 521 578 IPR001841 -
Eupl11g00069 812 ProSiteProfiles YDG domain profile. 277 425 IPR003105 -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 714 732 - -
Eupl11g00069 812 Gene3D - 248 446 IPR036987 -
Eupl11g00069 812 SUPERFAMILY PUA domain-like 251 447 IPR015947 -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 99 137 - -
Eupl11g00069 812 Pfam RING-type zinc-finger 521 576 IPR027370 -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 665 812 - -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 453 500 - -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 605 632 - -
Eupl11g00069 812 Coils Coil 592 612 - -
Eupl11g00069 812 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 248 443 - -
Eupl11g00069 812 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 628 IPR045134 -
Eupl11g00069 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 215 IPR013083 -
Eupl11g00069 812 CDD RING-HC_ORTHRUS_rpt1 146 192 IPR047498 -
Eupl11g00069 812 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 93 216 - -
Eupl11g00069 812 SMART ring_2 15 60 IPR001841 -
Eupl11g00069 812 SMART ring_2 149 187 IPR001841 -
Eupl11g00069 812 SMART ring_2 521 578 IPR001841 -
Eupl11g00069 812 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Eupl11g00069 812 ProSitePatterns Zinc finger RING-type signature. 536 545 IPR017907 -
Eupl11g00069 812 MobiDBLite consensus disorder prediction 453 476 - -
Eupl11g00069 812 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 IPR018957 GO:0046872
Eupl11g00069 812 SUPERFAMILY FYVE/PHD zinc finger 5 63 IPR011011 -
Eupl11g00069 812 Pfam SAD/SRA domain 280 428 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00069 Eupl-Chr11 845169 855008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00069 1 610 C2H2 Transcription Factor Family AT5G39550 63.399 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00069 K10638 - nnu:104591868 1121.69