Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00044 ATGGATTTTAACAACCCAAGAACAAACCCATCTTCGTCTTCTTCAAGTTCAACTCCCCTGTTTTCTCAAGAAAAAAAGAGCAAGAAAAAACAGCAACAACAAGAAACAACAGTAAGGTTTCTCGGAGTTCGAAGAAGGCCATGGGGTAGATACGCAGCTGAAATACGAGACCCATCAACCAAAGAGAGGCATTGGCTCGGCACCTTCGACACCGCCGAAGAGGCCGCCCTGGCTTACGATAGAGCTGCCCGGTCCATGCGAGGCTCGCGCGCCCGCACCAACTTTGTCTATTCCGATATGCCACCTGGCTCTTCCATCACCTCCATCATTTCCCCTGATGAAGCCCAACATGACCTCTCAGCCCTCTTCGTTCCTCCTCAACGAAACGACGACCCAGCCACCCAACTCTTCTTGACTCAGGATTCCAGCAATGTGTATCATTTTCCGGAGCAGCTTTCGGCCGGAGTGTCATGGGTTCCGGCGTCTGTCTCTCAACAACAACCAGTTGTTTTGGTTCGAACGTGCCAGCTTCGGGTTACGATATGGGTCTGGAAGTTTGGCCCGATACGACGAGTTTTCTTGGGTTTTCGGAGCAAACGACAACTGGATTCGATTCGGTAG 621 0.5105 MDFNNPRTNPSSSSSSSTPLFSQEKKSKKKQQQQETTVRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDMPPGSSITSIISPDEAQHDLSALFVPPQRNDDPATQLFLTQDSSNVYHFPEQLSAGVSWVPASVSQQQPVVLVRTCQLRVTIWVWKFGPIRRVFLGFRSKRQLDSIR* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00044 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 127 - -
Eupl11g00044 206 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Eupl11g00044 206 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 MobiDBLite consensus disorder prediction 1 22 - -
Eupl11g00044 206 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 Pfam AP2 domain 42 88 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 MobiDBLite consensus disorder prediction 1 39 - -
Eupl11g00044 206 FunFam Ethylene-responsive transcription factor 2 39 97 - -
Eupl11g00044 206 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Eupl11g00044 206 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00044 Eupl-Chr11 576841 577880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00044 26 111 AP2-EREBP Transcription Factor Family AT5G13910 88.372 5.07e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl11g00044 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00044 K09286 - nnu:104591899 202.216