Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00043 ATGGAAGACGTGAAGCCCTTGATTTCTATGAGTAATTCGCAAGGTGATGAAGGTGGCGCCTTGGAAGCTCGATTCGCGGAGCTCTGCAAGACTGGGTTGTTGCTCGATGAAAACATGTTTTCACAAGCTATGATGTTGTTTAAAGAAAGCAAGCATCTACTCTTAGCAAATATGTCAGCTATTGGAAGTGGAACGCCGGAGGAAATCGAACGGTTTTGGTTTGCATTCATTTTGTACTCTGTGAAGAGATTAAATGTGGGGAACACTGCAGAAACAAAGCTGGAGAGTGATGAAAGTGGGTTTACTTTGTGTCAGATATTGAGGGCCGCCAAGCTGAACGTTGTGGATTTCTTCAAAGAGATGCCACAGTTCAATCTCAAGGTCGGTCCAATTCTAAAGAACTTGTATGGCACAGATTGGGAGAAGAGACTCGAGGCAAAAGAGTTGCAGGCCAATTTTGTGCACTTGAGCCTTCTAAGCAAGTACTACAAACGCGTTTATCGGGAATTCTTCTTGACAAGTGATGCAAATGGTGATAAACAGCTGGCTGTTGCCAGCACAACAGGGTATGTATCGGACTACCATCGGTTTGGATGGTTGCTGTTCTTGGCGCTCCGTATTCATGCTTTCAGTCGCTTCAAGGACCTCGTGACTTGCACAAATGGATTGATTTCAATTGTGGCTATCCTGATTCTTCATGTTCCCGTCCGCTTCAGGAATTTCTCTATCCATGATTCTCCACAATTTGTTAGGAAAGGCAACAAAGGTGTGGACCTGCTTGCATCTCTTTGCAACATTTATGATACCTCGGAAGACGAGTTGAGGAGAACAATGGAGAAAGCCAATAATTTAATAGAGGATATTTTGAAGAAGAAACCCCGTTTGGCATCAGAATGTAAAACTGAAAACCTAGACAATATTGACACCGATGGATTGACCTTTTTTGAAGATCTAATGGAGGAGTCATCTTTGTCATCAAGTTTAATTATTCTGGAGAAGGATTATGATGCTGCAATACATAATAAAGGTGAACTGGATGAAAGGGTGTTTGTTAATGATGAGGACAGCTTGCTTGGTACAGGAAGCTTGTCTGGAGGTGCCATGAATATCTGTGGTGCCAAGCGGAAGTTTGATGTGATAACCTCCCCAGCGAAGACAATTACTAGTCCACTCTCTCCTCCACACTCTCCTACCGCATCACCCGCAAATGGTAATCTTTCTGGTGCCAACTCGAAGATGGCACCTACACCAGTAAGCACAGCAATGACAACTGCAAAATGGCTCCGTACTGTCATTTCTCCACTTCCTTCAAAACCCTCAACAGGACTGGAGCGCTTCCTTCTATCGTGTGACAGGGATGTAACTAATGATATAATACGTAGGGCCCACATAATATTGGAGGCCATCTTCCCAAGTAGTGCTCTTGGAGAGCGGTGTGTCGCAGGAAGCCTGCAGAGTGCAAACTTGATGGACAATATATGGTCAGAACAGAGGAGAATGGAAGCTCGGAAGTTATACTATAGGGTTTTGGAAGCAATGTGTACGGCAGAAGCTCAAATATTGCACGCTAGTAACTTGACCTCTTTACTAACCAACGAGAGGTTTCATCGATGCATGCTTGCTTGTTCAGCAGAACTGGTTTTAGCAACACACAAGACAGTTACTATGTTGTTTCCTGCGGTTTTGGAGCGAACTGGCATTACAGCTTTTGATTTGAGCAAGGTGATAGAGAGTTTCATTAGACACGAAGAATCTCTTCCGAGGGAGTTGAGAAGACATCTAAATTCTTTGGAAGAGAGACTATTGGAGAGCATGGTATGGGAAAAGGGCTCCTCAATGTACAATTCTTTGATTGTTGCAAAGCCGGCTTTTTCTGCGGAAATAAACCGGTTGGGATTATTAGCGGAACCCATGCCATCACTGGATGCAATTGCGATGCATAATAACATTTCCTGTGGAGGCTTGCCACCTCTGCCTTCTTTACATAAGCATGAAACTTCACCAGGTCAGAATGGAGACATGCGATCTCCAAAGAGAATGTGTAGTGATTATCGGAGTGTGTTGATAGAACGCAATTCCTTTGCATCTCCAGTGAAGGCCTTTACCAGTCTCAAATCAAAGTTACCACCACCTCCTCTACAGTCTGCTTTTGCCAGTCCAACACGGCCAAACCCAGGAGGAGGGGGAGAAACATGTGCCGAGACAGGAATCAACGTTTTCTTTAGTAAGATTGTAAAGTTAGCTGCTGTCAGAATCAATGGCTTGGTTGAAAGGCTACAATTGTCTCAGCAAGTCAGGAAGGAGACTGTTTACTGTCTTGTACAGCAAATCCTTAGTCAGCGGACAACTCTTTTCTTTAACCGACATATTGACCAAATTATCCTCTGCAGTTTATATGGAGTTGCAAAGATTTCCCAGTTAAACCTGACCTTTAAGGAAATCATTTACAACTATAGGAAGCAACCACAATGTAAACCTCAAGTTTTCCGCAGTGTCTTTGTTGATTGGACGTCTACGCGCCGCAATGGGAAAACAGGGCAGGAGCATGTTGATATTATTACGTTTTACAATGAAATATTTATTCCTGCCGTAAAGCCTTTGCTGGTGGAGCTTGGCCCTGCTGGTGCAACTCTAAGAACTAACCGGCTTCCCGAAGTTAATAATAATGCCGATGGTCAATGTCCCGGGTCACCTAGGTTATCTCCATTTCCAAGTCTCCCTGATATGTCCCCAAAGAAAGTCTCTGCAGCACATAATGTTTATGTCTCTCCACTACGGTCATCTAAGATGGATGCTTTGGTCTCACACAGCTCTAGAAGCTATTACGCATGTGTTGGAGAGAGCACTCATGCTTACCAAAGCCCTTCCAAAGACTTGACAGCCATTAATAACCGCTTGAATGGCAAGAAGGTCAACAGCAGGCTCAATTTTGACGATGTTGGCTTGGTAAGCGATTCTCTTGTTATGGGCAGTCTCTACCTTCAAAATGGCAGTTGCGCCTCCTCTTCAGGTGCCACTGTTTTAAAATCTCCCGTGAAATCTGAGCAACCCGACTCCTAA 3060 0.4412 MEDVKPLISMSNSQGDEGGALEARFAELCKTGLLLDENMFSQAMMLFKESKHLLLANMSAIGSGTPEEIERFWFAFILYSVKRLNVGNTAETKLESDESGFTLCQILRAAKLNVVDFFKEMPQFNLKVGPILKNLYGTDWEKRLEAKELQANFVHLSLLSKYYKRVYREFFLTSDANGDKQLAVASTTGYVSDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLISIVAILILHVPVRFRNFSIHDSPQFVRKGNKGVDLLASLCNIYDTSEDELRRTMEKANNLIEDILKKKPRLASECKTENLDNIDTDGLTFFEDLMEESSLSSSLIILEKDYDAAIHNKGELDERVFVNDEDSLLGTGSLSGGAMNICGAKRKFDVITSPAKTITSPLSPPHSPTASPANGNLSGANSKMAPTPVSTAMTTAKWLRTVISPLPSKPSTGLERFLLSCDRDVTNDIIRRAHIILEAIFPSSALGERCVAGSLQSANLMDNIWSEQRRMEARKLYYRVLEAMCTAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPAFSAEINRLGLLAEPMPSLDAIAMHNNISCGGLPPLPSLHKHETSPGQNGDMRSPKRMCSDYRSVLIERNSFASPVKAFTSLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINVFFSKIVKLAAVRINGLVERLQLSQQVRKETVYCLVQQILSQRTTLFFNRHIDQIILCSLYGVAKISQLNLTFKEIIYNYRKQPQCKPQVFRSVFVDWTSTRRNGKTGQEHVDIITFYNEIFIPAVKPLLVELGPAGATLRTNRLPEVNNNADGQCPGSPRLSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALVSHSSRSYYACVGESTHAYQSPSKDLTAINNRLNGKKVNSRLNFDDVGLVSDSLVMGSLYLQNGSCASSSGATVLKSPVKSEQPDS* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00043 1019 MobiDBLite consensus disorder prediction 385 415 - -
Eupl11g00043 1019 Gene3D - 419 607 - -
Eupl11g00043 1019 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Eupl11g00043 1019 Pfam Domain of unknown function (DUF3452) 97 233 IPR024599 -
Eupl11g00043 1019 SUPERFAMILY Cyclin-like 424 619 IPR036915 -
Eupl11g00043 1019 SUPERFAMILY Cyclin-like 735 906 IPR036915 -
Eupl11g00043 1019 Gene3D - 194 352 - -
Eupl11g00043 1019 Pfam Retinoblastoma-associated protein A domain 416 617 IPR002720 GO:0005634|GO:0051726
Eupl11g00043 1019 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1017 IPR028309 GO:0006357|GO:0051726
Eupl11g00043 1019 FunFam Retinoblastoma-related protein 1 194 352 - -
Eupl11g00043 1019 MobiDBLite consensus disorder prediction 884 910 - -
Eupl11g00043 1019 Pfam Retinoblastoma-associated protein B domain 737 865 IPR002719 GO:0005634|GO:0051726
Eupl11g00043 1019 FunFam Retinoblastoma-related protein 1 691 898 - -
Eupl11g00043 1019 CDD CYCLIN_AtRBR_like 737 869 - -
Eupl11g00043 1019 SMART DUF3452_2 84 233 IPR024599 -
Eupl11g00043 1019 Coils Coil 267 291 - -
Eupl11g00043 1019 Gene3D - 695 906 - -
Eupl11g00043 1019 FunFam Retinoblastoma-related protein 1 419 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00043 Eupl-Chr11 535513 544737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00043 1 1019 Core Cell Cycle Gene Families AT3G12280 70.805 0.0 1440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Eupl11g00043 RB_A 1.2e-63 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00043 K04681 - nnu:104591900 1705.26