Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00013 ATGGGTCGAAGACCTGCTCGGTGCTACAGACAGATCAAGAACAAGCCCTACCCAAAGTCGAGGTACTGCCGTGGTGTACCTGATCCTAAGATCAGGATCTATGATGTCGGCATGAAAAGGAAGGGTGTGGATGAGTTCCCCTTCTGCGTCCATCTTGTCAGCTGGGAGAAAGAGAATGTGTCCAGTGAAGCCCTCGAGGCAGCCCGGATTGCCTGCAACAAGTACATGACCAAATTTGCAGGGAAAGATGCTTTCCACCTTCGGGTTAGAGTCCACCCTTTCCATGTCCTGCGGATCAACAAGATGCTTTCTTGTGCAGGAGCTGATAGGCTCCAAACTGGTATGCGTGGTGCCTTTGGGAAGCCCCAGGGGACTTGCGCAAGGGTCAGCATTGGGCAGGTGTTGCTGTCTGTGCGGTGCAAAGATGCCAATGGAAACAATGCCCAAGAGGCACTAAGGAGGGCCAAATTCAAGTTCCCTGGCAGGTAG 489 0.5297 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDANGNNAQEALRRAKFKFPGR* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00013 162 FunFam 60S ribosomal protein L10 1 162 - -
Eupl11g00013 162 CDD Ribosomal_L16_L10e 41 162 IPR016180 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 NCBIfam 50S ribosomal protein L16 1 161 IPR001197 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 PANTHER 60S RIBOSOMAL PROTEIN L10 1 162 IPR001197 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 Pfam Ribosomal protein L16p/L10e 12 162 IPR016180 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 Gene3D Ribosomal protein L10e/L16 1 162 IPR036920 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 PIRSF RPL10a_RPL10e 1 162 IPR001197 GO:0003735|GO:0005840|GO:0006412
Eupl11g00013 162 SUPERFAMILY Ribosomal protein L16p/L10e 4 162 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00013 Eupl-Chr11 247561 248049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00013 1 162 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 93.210 1.32e-111 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00013 K02866 - aof:109849083 337.035