Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01324 ATGGGTTTCTCGATGCAGTATTCCGGTTTGCTCATAACTCATCCGATATACAAGGCGGCACTAATTTTAGCGGTGGCCAGATTGGTCTTTTGCTGGGCTCTCAGATATATGAGACTCTCCTCCTCCTCTGACGATCCTGAACATCACACCCAGATCCACATGGGTCCTCCTCATCCTTATTGCTCCTCCTCGCCCTCCGTCTCGGCCCAGATGATCCGAGACGGCCTCCACGTGGTCACTTACGGAGATATTACGGGGAGGCTGCCCGAAAATTGTAACACGTGCGCCGTGTGCTTGAACGAGTTGAGGAAGAGAGATAAGGTGAGGGAGCTGAGGAACTGCTGCCATGTGTTTCACAGGCGATGCATCGACAGATGGTTCGATCACGACGACCACAAGACCTGCCCCCTGTGCAGGGCTCCCTTACTAGTTGTCTCGAACGTAGGAGGCTTGACGAGGTCGGAGCCCAGCTGGGCCGTGGAGCGACTTCTCTATCTGTTTGGGGACGACCTTTTCTGA 519 0.5434 MGFSMQYSGLLITHPIYKAALILAVARLVFCWALRYMRLSSSSDDPEHHTQIHMGPPHPYCSSSPSVSAQMIRDGLHVVTYGDITGRLPENCNTCAVCLNELRKRDKVRELRNCCHVFHRRCIDRWFDHDDHKTCPLCRAPLLVVSNVGGLTRSEPSWAVERLLYLFGDDLF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01324 172 Pfam Ring finger domain 93 139 IPR001841 -
Eupl10g01324 172 SMART ring_2 95 138 IPR001841 -
Eupl10g01324 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 145 IPR013083 -
Eupl10g01324 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 170 - -
Eupl10g01324 172 ProSiteProfiles Zinc finger RING-type profile. 95 139 IPR001841 -
Eupl10g01324 172 SUPERFAMILY RING/U-box 94 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01324 Eupl-Chr10 33476869 33477546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01324 1 171 C3H Transcription Factor Family AT5G20885 44.681 2.76e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01324 K16281 - pop:7492274 199.904