Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01319 ATGGCGCCCGAACCTGAAGAAGAGATCAACGAAAAGAACCCTCGTCCTCTCGATGAGGACGATATAGCCCTCCTCAAAACCTACGGCCTAGGACCTTATTCTACTAGCATAAAGAAAGTTGAGAAGGAAATTAAGGAAATGGCCAAGAAGGTCAACGATCTATGTGGAATTAAGGAGTCAGACACTGGTTTAGCTGCACCCAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAAGAAGAGCAACCTCTTCAGGTTGCAAGATGCACGAAGATAATTAACCAGAATTCTGAAGACGCAAAGTATGTCATAAACGTTAAGCAAATTGCGAAGTTTGTTGTTGGGCTGGGTGACAAAGTCTCCCCAACTGATATTGAAGAAGGCATGCGTGTAGGGGTTGATCGAAATAAATATCAGATTCAGATTCCGTTGCCTCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAAAAGCCAGATGTTACATACAATGATGTTGGTGGATGTAAGGAGCAGATTGAAAAGATGCGAGAGGTTGTTGAGCTGCCCATGCTTCATCCGGAGAAATTTGTGAAGCTTGGAATCGATCCTCCTAAGGGTGTGCTCTGCTATGGCCCTCCTGGAACTGGTAAAACGCTCCTAGCTAGAGCTGTAGCCAACAGAACTGATGCCTGTTTCATTCGAGTTATTGGAAGCGAGCTTGTTCAGAAATACGTCGGTGAGGGAGCTCGGATGGTTCGAGAGCTTTTTCAGATGGCTCGCTCGAAGAAGGCTTGCATTGTCTTTTTCGATGAAGTGGATGCGATAGGGGGTGCACGTTTCGATGATGGTGTGGGTGGAGATAATGAGGTTCAGCGTACGATGCTGGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATTAAAGTTCTAATGGCAACAAACAGACCTGACACACTAGACCCAGCTCTATTACGACCTGGACGACTAGATCGTAAGGTTGAGTTTGGACTACCTGATCTGGAGAGCAGGACACAGATATTCAAGATCCACACACGAACAATGAACTGTGAAAGAGATATTCGGTTTGAGCTTCTCGCTCGCCTTTGCCCGAACTCCACTGGAGCGGACATACGGAGCGTGTGCACGGAGGCTGGGATGTATGCTATACGGGCACGAAGGAAGACTGTGACAGAGAAAGATTTCCTTGATGCCGTGAATAAGGTCATCAAGGGCTACCAGAAGTTCAGTGCAACTCCGAAGTACATGGTCTACAATTAA 1278 0.4601 MAPEPEEEINEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINQNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01319 425 FunFam 26S protease regulatory subunit 7 338 409 - -
Eupl10g01319 425 Gene3D - 157 336 IPR027417 -
Eupl10g01319 425 FunFam 26S protease regulatory subunit 7 157 336 - -
Eupl10g01319 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 415 IPR027417 -
Eupl10g01319 425 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 15 411 - -
Eupl10g01319 425 Pfam ATPase family associated with various cellular activities (AAA) 204 336 IPR003959 GO:0005524|GO:0016887
Eupl10g01319 425 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Eupl10g01319 425 FunFam 26S protease regulatory subunit 7 32 156 - -
Eupl10g01319 425 Gene3D - 32 156 IPR012340 -
Eupl10g01319 425 SMART AAA_5 200 339 IPR003593 GO:0016887
Eupl10g01319 425 Pfam AAA+ lid domain 359 402 IPR041569 -
Eupl10g01319 425 CDD RecA-like_PAN_like 165 335 - -
Eupl10g01319 425 Gene3D - 338 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01319 Eupl-Chr10 33425807 33435739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01319 169 390 Calmodulin-binding Proteins AT3G56690 37.220 9.07e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01319 K03061 - atr:18427470 842.802