Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01315 ATGGAAGATTTGGAGCACCGTCCCAGATTCGACAATTCCGAAGCCGTCGTAATAGGCGGCAAGATCATGTTGGCGGCCATCATCGTCCTCTTCTTGGTCGTTGTCTTCGTTATCTTCCTCCATTTCTATGTCAAGTGGTACTGGAGGCGCAGAGTCGACGGCAGCCTCCGTTCTCGACCAAGTCGCCGTCGCTTCGTCTTCGCCCCCAACCAAGACCCAATTGTTGCCATGCATAGAGGACTCGAACCATCAGTACTTCGTTCTCTCCCCGTCCTGATATTCCATCCCCATGAGTTCAAGGACGACTTGGAATGTGCAGTGTGCCTTTGCGAGATATCCGATGGGGAGAAAGCCCGGTTGCTTCCTAAATGTAACCACGGATTCCATGTGGATTGCATCGACATGTGGTTCCAATCCCATTCAACCTGTCCGCTCTGTAGAATTCCAGTTACTCTCGAATCTGCCAACCCCAGTCTTCAGTCAAGGGAATCCCTGAATTTTCCCACAAACGTCTTGTTTTGGGAGAACCAGACTCATCAGAGCACCGGAGAAGAAGGAGCATCTTCTTCTCCATCCTCATCGACTAGTAGACAAGACAGAATGTTGAAGATTGAAATACCCAGGCGGTTTAATGAAGGCATGTCGTCATTATCACCTTCGACAAGCAGGTTTGGTGAGGAGGAATCGGAGTCGCCAATGACAACACGATTAAGATCATTAAAGAGGCTTTTGAGTTGGGAGAAAAGGGTTATACCTTGCAGTCCTAGTTCAGTTGACGTCGAACAAGGGGAAGGAGGGAGAGCTTTCAATGCATCTGTACTGCTAGAGATTGATGATTGTTTCAGTTGGGTATTTGTGATTTACGACTCTGAGAGTGTTTGCGGACAACCCATTTCGTTTCTATAG 906 0.4834 MEDLEHRPRFDNSEAVVIGGKIMLAAIIVLFLVVVFVIFLHFYVKWYWRRRVDGSLRSRPSRRRFVFAPNQDPIVAMHRGLEPSVLRSLPVLIFHPHEFKDDLECAVCLCEISDGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRIPVTLESANPSLQSRESLNFPTNVLFWENQTHQSTGEEGASSSPSSSTSRQDRMLKIEIPRRFNEGMSSLSPSTSRFGEEESESPMTTRLRSLKRLLSWEKRVIPCSPSSVDVEQGEGGRAFNASVLLEIDDCFSWVFVIYDSESVCGQPISFL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01315 301 CDD RING-H2_EL5-like 104 147 - -
Eupl10g01315 301 SUPERFAMILY RING/U-box 85 155 - -
Eupl10g01315 301 SMART ring_2 105 146 IPR001841 -
Eupl10g01315 301 MobiDBLite consensus disorder prediction 212 232 - -
Eupl10g01315 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 240 - -
Eupl10g01315 301 MobiDBLite consensus disorder prediction 213 228 - -
Eupl10g01315 301 MobiDBLite consensus disorder prediction 179 199 - -
Eupl10g01315 301 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Eupl10g01315 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
Eupl10g01315 301 FunFam RING-H2 finger protein ATL3 72 152 - -
Eupl10g01315 301 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01315 Eupl-Chr10 33380304 33387490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01315 9 248 C3H Transcription Factor Family AT1G53820 39.404 1.59e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01315 - - nnu:104609244 311.997