Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01300 ATGATGTTTCATGCTCAAGGCCCTTCGAAATATACGTGTGGCCTCCTTGCAGTTCTGTGTGGAAAAATTCCCGATTATAAACAGAAGTGTGATCTGGATGTTTCAGAGGATCGGCCAAGATACCCCTTTCCAGAGCTTGGTTCTTCTGGTCGTCTAGAGGTTCAGACCCTGACCAATCCGACAACCAATGAGTTCAGGCAAGTTTTAGAATCATTGGAGCCAAATATTGTGTACTTGCAAGGTGAGCAGCTTCCAAATGCCGAAGAAATAGGTTCTCTTGTGTGGGGAGGTGTTGACTTGTCCACTGCCCAGGCCATATCTGGGCTCTTTGATTCCACATTACCCACCACTGTTTATTTGGAAATCCCCAATGGTGAAAAGTTTGCGGAGGCACTTCACTCTAAGGGAGTTCCTTACGTGATATATTGGAAGAATGCATTCTCATGTTATGCAGCTTGCCATTTTCGCCAGGCATTTTTGTCAGTGGTAAAGAGTTCGAGTAGCCATACGTGGGATGCTTTCCAACTTGCACATGCATCTTTTAGGCTCTACTGTGTACGAAACAACCATGTCTTGCCAGCTAACAGCCACAAAGTTAGTGGGAAGCTGGGGCCCCGCCTTCTCGGGGACCCTCCAAAGATCAACATTGCTCCACTGGAGAAAGATGCAGGGGAAGAAGAAGAAGAAGACTCATCTGATACTCTTCCCGCTATAAAAGTATATGATGATGATGTCAGCATGAGGTTCCTTGTTTGTGGAGGGCCATGCACTTTGGATGCATGCTTATTGGGATCTTTGGAAGATGGCCTCAATGCCCTCTTGAGCATCGAAATACGTGGGAGTAAACTTCATAATCGGGTCAGTGCTCCACCACCTCCTCTTCAGGCAGGGACATTTTCTCGTGGGGTTGTGACCATGCGATGTGATCTGTCTACCTGTAGTTCTGCCCATATCTCGCTTTTAGTCTCTGGTAGTGCGCAGACTTGTTTCGATGATGAGCTCTTGGAGAATCATATAAAAAACGAACTTATTGAGAAGAGTCAGCTAGTCCATGCATTCCCGAGCTGTGAGGAAAGCAAACCATCTTTGTCCGAGCCTCGGAAGTCTGCTTCAATAGCTTGTGGGGCAACTGTATTTGAAGTTTGCATGAAGGTTCCAACGTGGGCTTCACAGGTATTGAGGCAGCTTGCACCAAAAGTTTCTTACTGTAGCTTCATTACACTTGGCATTGCCAGTATTCAGGGATCATCTGTTGCTTCTTTCGAGAAAGATGATGCCGAGCGCCTTCTTTTCTTCTGTAATAGCAGAGGGAAGGATCTCCATCCAAAAAGTGCTATTCCTAGTAGTTCCCCAAGCTGGTTAAAACCGCCTCCTCCTAGCCGAAAGAGGTCTGAGCCATGCCGAGAAGCAAGACCTGTTACCTGTAATGGTGTGGTGTGTGAAAATGGACCAGGTGTTACAGAAATAGAGGAAGATAACAATAAGGAAACTGGATTAATTGATGGGGTCAGCATACCCTTACAATCTGTTAGAAAGAGACTGAAAGTTGCTGCAATGAGGCCAATTCCTCACACCCGTCACCACAAGATGCTGCCCTTTTTGGGGATTTCTGAGGCTGATGGGTATGATGGAGGCCAGGCGAAGGCTAGCATATCAATTGTCTCCTCAACGAAGCATAATATGGTGGTGACCGCCCCTGTCATGCATCGAAAATCATTCTCAAGCTCTTTTCAGGCGCAGCAGATTATTTCCTTGAATCCTCTACCACTGAAGAAACATGGTTGCGGTCGATGTCCTATTCAAGTTTGCTCAGAGGAGGAGTTTCTAAGGGATGTCATGCAGTTTCTCGTCCTTCGCGGACATACCCGGCTTGTTCCTCAAGGTGGTCTAGCCGAATTCCCAGAGGCCATTCTCAATGCAAAGCGTCTGGACCTCTACAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTCGGAAATGGCATCAACTGGAAAGGCCAGGTTTTCTCAAAGATGCGCAATCATACAATAACCAACAGAATGACAGGTGTTGGGAATACTCTGAAAAGACATTACGAAACGTATCTTTTGGAATATGAATTAGCCCATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCATAGTAGCGCAGCCGGTGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCACACTTCGGCTGTGACAGACGGCAGGGACTTGGTGCCTTCAAGGACTACGCAAAAACGGATGGGCTGGAGTATATTTGCCCGCACTGCAGTGTAACGAATTTCAGGAGGAAACCACAAAAACCTGCGAATGGATATTCGAAAGGTTCAACAGTTTAA 2358 0.4665 MMFHAQGPSKYTCGLLAVLCGKIPDYKQKCDLDVSEDRPRYPFPELGSSGRLEVQTLTNPTTNEFRQVLESLEPNIVYLQGEQLPNAEEIGSLVWGGVDLSTAQAISGLFDSTLPTTVYLEIPNGEKFAEALHSKGVPYVIYWKNAFSCYAACHFRQAFLSVVKSSSSHTWDAFQLAHASFRLYCVRNNHVLPANSHKVSGKLGPRLLGDPPKINIAPLEKDAGEEEEEDSSDTLPAIKVYDDDVSMRFLVCGGPCTLDACLLGSLEDGLNALLSIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFDDELLENHIKNELIEKSQLVHAFPSCEESKPSLSEPRKSASIACGATVFEVCMKVPTWASQVLRQLAPKVSYCSFITLGIASIQGSSVASFEKDDAERLLFFCNSRGKDLHPKSAIPSSSPSWLKPPPPSRKRSEPCREARPVTCNGVVCENGPGVTEIEEDNNKETGLIDGVSIPLQSVRKRLKVAAMRPIPHTRHHKMLPFLGISEADGYDGGQAKASISIVSSTKHNMVVTAPVMHRKSFSSSFQAQQIISLNPLPLKKHGCGRCPIQVCSEEEFLRDVMQFLVLRGHTRLVPQGGLAEFPEAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTITNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFRRKPQKPANGYSKGSTV* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01300 785 SUPERFAMILY FYVE/PHD zinc finger 705 770 IPR011011 -
Eupl10g01300 785 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677
Eupl10g01300 785 SMART ARID_2 599 702 - -
Eupl10g01300 785 SUPERFAMILY ARID-like 603 717 IPR036431 GO:0003677
Eupl10g01300 785 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677
Eupl10g01300 785 CDD PHD_ARID4_like 712 763 - -
Eupl10g01300 785 Gene3D - 600 705 IPR036431 GO:0003677
Eupl10g01300 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 782 IPR042293 -
Eupl10g01300 785 MobiDBLite consensus disorder prediction 441 468 - -
Eupl10g01300 785 CDD ARID 604 702 - -
Eupl10g01300 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 768 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01300 Eupl-Chr10 33249387 33259544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01300 2 778 ARID Transcription Factor Family AT3G43240 64.706 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl10g01300 ARID 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01300 - - ming:122064078 1291.17