LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g01300	ATGATGTTTCATGCTCAAGGCCCTTCGAAATATACGTGTGGCCTCCTTGCAGTTCTGTGTGGAAAAATTCCCGATTATAAACAGAAGTGTGATCTGGATGTTTCAGAGGATCGGCCAAGATACCCCTTTCCAGAGCTTGGTTCTTCTGGTCGTCTAGAGGTTCAGACCCTGACCAATCCGACAACCAATGAGTTCAGGCAAGTTTTAGAATCATTGGAGCCAAATATTGTGTACTTGCAAGGTGAGCAGCTTCCAAATGCCGAAGAAATAGGTTCTCTTGTGTGGGGAGGTGTTGACTTGTCCACTGCCCAGGCCATATCTGGGCTCTTTGATTCCACATTACCCACCACTGTTTATTTGGAAATCCCCAATGGTGAAAAGTTTGCGGAGGCACTTCACTCTAAGGGAGTTCCTTACGTGATATATTGGAAGAATGCATTCTCATGTTATGCAGCTTGCCATTTTCGCCAGGCATTTTTGTCAGTGGTAAAGAGTTCGAGTAGCCATACGTGGGATGCTTTCCAACTTGCACATGCATCTTTTAGGCTCTACTGTGTACGAAACAACCATGTCTTGCCAGCTAACAGCCACAAAGTTAGTGGGAAGCTGGGGCCCCGCCTTCTCGGGGACCCTCCAAAGATCAACATTGCTCCACTGGAGAAAGATGCAGGGGAAGAAGAAGAAGAAGACTCATCTGATACTCTTCCCGCTATAAAAGTATATGATGATGATGTCAGCATGAGGTTCCTTGTTTGTGGAGGGCCATGCACTTTGGATGCATGCTTATTGGGATCTTTGGAAGATGGCCTCAATGCCCTCTTGAGCATCGAAATACGTGGGAGTAAACTTCATAATCGGGTCAGTGCTCCACCACCTCCTCTTCAGGCAGGGACATTTTCTCGTGGGGTTGTGACCATGCGATGTGATCTGTCTACCTGTAGTTCTGCCCATATCTCGCTTTTAGTCTCTGGTAGTGCGCAGACTTGTTTCGATGATGAGCTCTTGGAGAATCATATAAAAAACGAACTTATTGAGAAGAGTCAGCTAGTCCATGCATTCCCGAGCTGTGAGGAAAGCAAACCATCTTTGTCCGAGCCTCGGAAGTCTGCTTCAATAGCTTGTGGGGCAACTGTATTTGAAGTTTGCATGAAGGTTCCAACGTGGGCTTCACAGGTATTGAGGCAGCTTGCACCAAAAGTTTCTTACTGTAGCTTCATTACACTTGGCATTGCCAGTATTCAGGGATCATCTGTTGCTTCTTTCGAGAAAGATGATGCCGAGCGCCTTCTTTTCTTCTGTAATAGCAGAGGGAAGGATCTCCATCCAAAAAGTGCTATTCCTAGTAGTTCCCCAAGCTGGTTAAAACCGCCTCCTCCTAGCCGAAAGAGGTCTGAGCCATGCCGAGAAGCAAGACCTGTTACCTGTAATGGTGTGGTGTGTGAAAATGGACCAGGTGTTACAGAAATAGAGGAAGATAACAATAAGGAAACTGGATTAATTGATGGGGTCAGCATACCCTTACAATCTGTTAGAAAGAGACTGAAAGTTGCTGCAATGAGGCCAATTCCTCACACCCGTCACCACAAGATGCTGCCCTTTTTGGGGATTTCTGAGGCTGATGGGTATGATGGAGGCCAGGCGAAGGCTAGCATATCAATTGTCTCCTCAACGAAGCATAATATGGTGGTGACCGCCCCTGTCATGCATCGAAAATCATTCTCAAGCTCTTTTCAGGCGCAGCAGATTATTTCCTTGAATCCTCTACCACTGAAGAAACATGGTTGCGGTCGATGTCCTATTCAAGTTTGCTCAGAGGAGGAGTTTCTAAGGGATGTCATGCAGTTTCTCGTCCTTCGCGGACATACCCGGCTTGTTCCTCAAGGTGGTCTAGCCGAATTCCCAGAGGCCATTCTCAATGCAAAGCGTCTGGACCTCTACAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTCGGAAATGGCATCAACTGGAAAGGCCAGGTTTTCTCAAAGATGCGCAATCATACAATAACCAACAGAATGACAGGTGTTGGGAATACTCTGAAAAGACATTACGAAACGTATCTTTTGGAATATGAATTAGCCCATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCATAGTAGCGCAGCCGGTGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCACACTTCGGCTGTGACAGACGGCAGGGACTTGGTGCCTTCAAGGACTACGCAAAAACGGATGGGCTGGAGTATATTTGCCCGCACTGCAGTGTAACGAATTTCAGGAGGAAACCACAAAAACCTGCGAATGGATATTCGAAAGGTTCAACAGTTTAA	2358	0.4665	MMFHAQGPSKYTCGLLAVLCGKIPDYKQKCDLDVSEDRPRYPFPELGSSGRLEVQTLTNPTTNEFRQVLESLEPNIVYLQGEQLPNAEEIGSLVWGGVDLSTAQAISGLFDSTLPTTVYLEIPNGEKFAEALHSKGVPYVIYWKNAFSCYAACHFRQAFLSVVKSSSSHTWDAFQLAHASFRLYCVRNNHVLPANSHKVSGKLGPRLLGDPPKINIAPLEKDAGEEEEEDSSDTLPAIKVYDDDVSMRFLVCGGPCTLDACLLGSLEDGLNALLSIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFDDELLENHIKNELIEKSQLVHAFPSCEESKPSLSEPRKSASIACGATVFEVCMKVPTWASQVLRQLAPKVSYCSFITLGIASIQGSSVASFEKDDAERLLFFCNSRGKDLHPKSAIPSSSPSWLKPPPPSRKRSEPCREARPVTCNGVVCENGPGVTEIEEDNNKETGLIDGVSIPLQSVRKRLKVAAMRPIPHTRHHKMLPFLGISEADGYDGGQAKASISIVSSTKHNMVVTAPVMHRKSFSSSFQAQQIISLNPLPLKKHGCGRCPIQVCSEEEFLRDVMQFLVLRGHTRLVPQGGLAEFPEAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTITNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFRRKPQKPANGYSKGSTV*	786

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g01300	785	SUPERFAMILY	FYVE/PHD zinc finger	705	770	IPR011011	-
	Eupl10g01300	785	Pfam	ARID/BRIGHT DNA binding domain	605	702	IPR001606	GO:0003677
	Eupl10g01300	785	SMART	ARID_2	599	702	-	-
	Eupl10g01300	785	SUPERFAMILY	ARID-like	603	717	IPR036431	GO:0003677
	Eupl10g01300	785	ProSiteProfiles	ARID domain profile.	602	706	IPR001606	GO:0003677
	Eupl10g01300	785	CDD	PHD_ARID4_like	712	763	-	-
	Eupl10g01300	785	Gene3D	-	600	705	IPR036431	GO:0003677
	Eupl10g01300	785	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4	4	782	IPR042293	-
	Eupl10g01300	785	MobiDBLite	consensus disorder prediction	441	468	-	-
	Eupl10g01300	785	CDD	ARID	604	702	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g01300	Eupl-Chr10	33249387	33259544	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl10g01300	2	778	ARID Transcription Factor Family	AT3G43240	64.706	0.0	1011

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Eupl10g01300		ARID	1.2e-13	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g01300	-		-	ming:122064078	1291.17

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