Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01299 ATGGCAAAACCATCAAGCTCAAGTCTCATGGACGATCTTTACTTGTCAATTCTCTCTGATGAAGATGAAGAGGAGATCTTCCAAATCTCCGATGTAGAAGAGTTACAGCTCCAAGAGGTTCTAATGTCGTCCTTGACCATTTCTCAAATGGCAGTTGAGTCATCAAAATTCAAAGAAGCTGCTGGTGGTGAATCTTCTCAAAGCTTATGTGGTATTTGCATGGAAGGGAAACCAAGGGAAGAGATGTTCAGAAACAACAAGTGTTCTCACTCATTCTGTTCTGACTGTATAAGCAATCATGTGGCGGCGAAGATCCAAGATAACATCAACAAGATTACGTGCCCAGGATTAAACTGCGAGGCGGTGTTAGAACCTCATCTTTGTCGATCGATTATCCCTGAGGAAGTCTTTGATCGGTGGGGGAACGCTCTATGTGAGTCTTTAATTCTTGGATCCCAGAAATTTTACTGCCCTTTCAAGGACTGTTCAGCGATGTTGATCTCCGATGGAGGAGAGGTGATTAAGGAGTCGGAGTGTCCGAATTGCCGAAGATTGTTCTGCGCGCAGTGCAAGGTCCCATGGCATTCGGAGATGAGGTGTAACGATTTTCAGAGATTGAACAAGGATGAGAGAGGGAGTGAAGATCTGATGGTGATGGCACTTGCTAAACAAAATAAATGGAAGAGATGTCCGAATTGCAAGTCTTATGTGGAAAAGAAAGACGGTTGTTTACATATTACTTGCAGGTGCGGATTTCAATTTTGCTATGGCTGTGGATCCAAGTGGACTCTACTTCACGGTGATTGCCAGAGAGCACAGAGACAAGGGAGAGAGTGA 837 0.4421 MAKPSSSSLMDDLYLSILSDEDEEEIFQISDVEELQLQEVLMSSLTISQMAVESSKFKEAAGGESSQSLCGICMEGKPREEMFRNNKCSHSFCSDCISNHVAAKIQDNINKITCPGLNCEAVLEPHLCRSIIPEEVFDRWGNALCESLILGSQKFYCPFKDCSAMLISDGGEVIKESECPNCRRLFCAQCKVPWHSEMRCNDFQRLNKDERGSEDLMVMALAKQNKWKRCPNCKSYVEKKDGCLHITCRCGFQFCYGCGSKWTLLHGDCQRAQRQGRE* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01299 278 SMART ibrneu5 210 269 IPR002867 GO:0008270
Eupl10g01299 278 SMART ibrneu5 138 200 IPR002867 GO:0008270
Eupl10g01299 278 Gene3D - 198 278 - -
Eupl10g01299 278 CDD Rcat_RBR_unk 226 262 - -
Eupl10g01299 278 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 273 IPR031127 GO:0004842|GO:0016567
Eupl10g01299 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Eupl10g01299 278 ProSiteProfiles Zinc finger RING-type profile. 70 115 IPR001841 -
Eupl10g01299 278 Pfam IBR domain, a half RING-finger domain 221 269 IPR002867 GO:0008270
Eupl10g01299 278 Pfam IBR domain, a half RING-finger domain 151 200 IPR002867 GO:0008270
Eupl10g01299 278 CDD BRcat_RBR_unk 151 203 - -
Eupl10g01299 278 FunFam RBR-type E3 ubiquitin transferase 202 274 - -
Eupl10g01299 278 SMART ring_2 230 272 IPR001841 -
Eupl10g01299 278 SMART ring_2 70 117 IPR001841 -
Eupl10g01299 278 FunFam RBR-type E3 ubiquitin transferase 65 151 - -
Eupl10g01299 278 SUPERFAMILY RING/U-box 65 147 - -
Eupl10g01299 278 SUPERFAMILY RING/U-box 147 205 - -
Eupl10g01299 278 ProSiteProfiles TRIAD supradomain profile. 66 273 IPR044066 -
Eupl10g01299 278 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Eupl10g01299 278 SUPERFAMILY RING/U-box 211 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01299 Eupl-Chr10 33224055 33225445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01299 63 260 C3H Transcription Factor Family AT2G19610 27.885 7.68e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01299 K11975 - nnu:104609385 375.941