Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01292 ATGACGACAACGAAAGGGTTATCTCAGAAAGAAGCAGATATTCAGATGATGTTGGCCGCGGATGTCCATCTGGGCACCAAAAATTGTGACTTTCAGATGGAGAGATATGTATTTAAGAGAAGAACGGATGGCATCTTCATTATAAATCTTGGGAAAACATGGGAGAAACTTCAGCTGGCTGCTAGGGTTATAGTTGCTATTGAGAACCCTCAAGACATCATCGTTCAATCTGCAAGGCCATATGGTCAAAGAGCTGTGCTGAAGTTCGCACAGTACACAGGTGCTCACCCAATTGCAGGTCGACACACGCCTGGAACGTTTACAAATCAGCTCCAGACGTCATTTAGCGAGCCTCGTCTACTCATCCTCACTGACCCAAGAACAGATCACCAGCCAATTAAGGAGGCTGCACTTGGTAACATTCCGACCATTGCGTTCTGCGATACAGATTCGCCGATGCGATATGTGGATATTGGGATTCCTGCCAATAACAAGGGAAAACACAGCATAGGTTGTCTGTTCTGGTTGTTGTCGAGGATGGTTCTGCAGATGCGTGGCACCATTCTTCCTGGGCAAAAATGGGATGTGATGGTGGATTTGTTTTTCTACAGGGACCCTGAGGAGGCCAAGGAACAGGAAGAAGAAGAGGTCGCTGCTGCCCCTGATTTTGGAGTCACAGATTACTCGGCCACTCTTGGTCTTCCTGGTGATCAATGGCCTAGCCAAATTCCCGATTCCCAGTGGGCTCCAGAAATGGCTCCTGCTCCAGCCATTCCTGCTGTTCCCGGTGCTGTTCCTGGTGTGGACTGGACTCCAGCTCCAGTACCTCTGTCGGGAGATGGATGGGATACCGCAGCTGCACCAGCACCTGCACCTGCACTTGCACCACCAATGGCTGATGTTATTTCTGCCCCAGCTACAGGTTGGGAATGA 933 0.4973 MTTTKGLSQKEADIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHPIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLSRMVLQMRGTILPGQKWDVMVDLFFYRDPEEAKEQEEEEVAAAPDFGVTDYSATLGLPGDQWPSQIPDSQWAPEMAPAPAIPAVPGAVPGVDWTPAPVPLSGDGWDTAAAPAPAPALAPPMADVISAPATGWE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01292 310 SUPERFAMILY Ribosomal protein S2 9 199 IPR023591 -
Eupl10g01292 310 Hamap 40S ribosomal protein SA [rps-0]. 4 251 IPR027498 GO:0003735|GO:0006412|GO:0015935
Eupl10g01292 310 PANTHER 40S RIBOSOMAL PROTEIN SA 3 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl10g01292 310 NCBIfam 30S ribosomal protein S2 9 204 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl10g01292 310 Gene3D - 13 219 - -
Eupl10g01292 310 ProSitePatterns Ribosomal protein S2 signature 2. 118 142 IPR018130 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 Pfam Ribosomal protein S2 17 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 Pfam Ribosomal protein S2 116 181 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 118 135 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 135 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 93 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 14 32 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 44 53 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 PRINTS Ribosomal protein S2 signature 156 170 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl10g01292 310 FunFam 40S ribosomal protein SA 13 219 - -
Eupl10g01292 310 CDD RPS2 17 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01292 Eupl-Chr10 33096637 33110129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01292 2 279 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.286 1.50e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01292 K02998 - nnu:104600469 503.827