LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g01269	ATGGCGATTTGTGAGCAACGAGTTTTAAACAAAGATTTTCAAGAAGCTTATGGCGAAGATGGAGAATCGGGCACTGAAGAATGTAATTCGGATGATTCCGAAGATGATCCAAGTTATGACATTCTTGAAGAAACCCATTCGCGTTTCTCGAATCTTTCGCTGAAGAAATCTAAGTCTCGTAATTCCAAAGTGATCGATTCATTTAGTGAGGGGGAGCTAGATGATGTGGAGATAAAGGTGCCGGGGCTCAACGAGAAAGACGAGAAAAGTTTTGAGAAAGTTGAAAAGATCATTCAAGCTGGTTGGTTGGAGAAACTAAAAGTTGAACAATGCAAGCTTTATTTGAGGAAGAATGGCTTGAGATTAACCGGCAATAAGGACGTTCTCATTGAGCGCATTAGAGAGCATCTCGGGGTCATAGATGGAGGTGGAGAAATGAAGTATCCAATATCCAGCTTTGTATTGAATTGCAAAGGGGATGCATGCACTGGAGATGTGGTAATGTTTGAACAAAATGTTTATGAAATGTATAACATAGCATCAAGGAGTGCCACAGGTCCTCCATGTGGTACTAGGATTGTTGCAGGTCGTATTGTGAAAGAAAGCTATGGTGCTGCGAAGCAACAACACACATTTACGATTGAAGTGCTATGGAGCAAAGGAGTGAAACCTCTACCTCCACTTCATCCTCTCCTCATTAAGGGAAGAAACCTTTACAGGCTCAAGACAATGAGGCAGAGATGGGCGGATGAAGAGGAGAGGAGGAAAGTTTTGCTAGAAAAGCACTCCAGAGGTTCTCTTGCAAGGTCCAACAGAGAAACAAGGTTCCAAGAGAAGGAAACGAGGAAGATGCTTAAGGGACAAAGGATAACAAAAAAGGAGAGCAGCACCATCCAAGAGCAGAACAGACAGCCCCTTCCAGATCCAGTTAAATCCAACTTTTCTCGACAACCAATTGTCCAATCTCAGCAACAACAGCAACCCATCGAGTCAACAAACCTTCAGGAACAGTTTACTCAGTTTCATCAACATAAATCAGCTATCCCACAAAACATAATTCTTACAGAGATCCATGAGCAGAACAAAACTCAGCCACAACACTGCATCTCACAGAATTCAATCAAATATCAGAACTCAAATATCACAGAAGAATGGCGTAACGAAGTTGAGAATCTTCAAAGAACTGGATTTCCCATTGCCAACAGGCAACATCACTTCCCATGTACAAATGGGTCATCACACCCTATTACAAATGAATCATTAGATAGGTCCCTTCATAAGCAGCCGTCAAGCTTGAATTCTCCTCCTCGGAGTCCGCTGCATCCTTTCTGTGGAAAAGAACGTCAATTTCATGTTCAAAAGTACCCAAGTGATAATGGGTCATTGGATAGTTTGCTTCAGAGACAGCCATTAACAAGCTTGAATTTACCTCGGAGTCAGCGGCATCACTTTGCTGCAGATCATGGATCTTCTCATGTTCAATCATACCGGCAGGGACCCATGCAATGGCAGGTGTGTCGATTCTATGCTCAAGGGAGGTGTTATTATGGAGATAACTGCAAGTATCTGCATGAATACCAAGAGAGAAGAGAAGAAAGGTGGCCTCAAGGGTATTCTGATCATTATAGAAATTAG	1635	0.4245	MAICEQRVLNKDFQEAYGEDGESGTEECNSDDSEDDPSYDILEETHSRFSNLSLKKSKSRNSKVIDSFSEGELDDVEIKVPGLNEKDEKSFEKVEKIIQAGWLEKLKVEQCKLYLRKNGLRLTGNKDVLIERIREHLGVIDGGGEMKYPISSFVLNCKGDACTGDVVMFEQNVYEMYNIASRSATGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGVKPLPPLHPLLIKGRNLYRLKTMRQRWADEEERRKVLLEKHSRGSLARSNRETRFQEKETRKMLKGQRITKKESSTIQEQNRQPLPDPVKSNFSRQPIVQSQQQQQPIESTNLQEQFTQFHQHKSAIPQNIILTEIHEQNKTQPQHCISQNSIKYQNSNITEEWRNEVENLQRTGFPIANRQHHFPCTNGSSHPITNESLDRSLHKQPSSLNSPPRSPLHPFCGKERQFHVQKYPSDNGSLDSLLQRQPLTSLNLPRSQRHHFAADHGSSHVQSYRQGPMQWQVCRFYAQGRCYYGDNCKYLHEYQERREERWPQGYSDHYRN*	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	19	39	-	-
	Eupl10g01269	544	PANTHER	SAP DOMAIN-CONTAINING PROTEIN	15	527	-	-
	Eupl10g01269	544	SUPERFAMILY	CCCH zinc finger	501	525	IPR036855	GO:0046872
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	291	330	-	-
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	262	330	-	-
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	406	444	-	-
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	406	434	-	-
	Eupl10g01269	544	Pfam	CCCH-type zinc finger	505	524	IPR041367	-
	Eupl10g01269	544	ProSiteProfiles	SAP motif profile.	103	137	IPR003034	-
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	14	40	-	-
	Eupl10g01269	544	ProSiteProfiles	Zinc finger C3H1-type profile.	500	527	IPR000571	GO:0046872
	Eupl10g01269	544	Pfam	SAP domain	103	137	IPR003034	-
	Eupl10g01269	544	SMART	c3hfinal6	502	526	IPR000571	GO:0046872
	Eupl10g01269	544	Gene3D	SAP domain	103	139	IPR036361	-
	Eupl10g01269	544	Gene3D	-	490	541	-	-
	Eupl10g01269	544	MobiDBLite	consensus disorder prediction	262	290	-	-
	Eupl10g01269	544	SMART	sap_9	103	137	IPR003034	-
	Eupl10g01269	544	SUPERFAMILY	SAP domain	92	137	IPR036361	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g01269	Eupl-Chr10	32847331	32850764	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Eupl10g01269		SAP	5e-10	CL0306

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g01269	-		-	nnu:104609301	476.478