Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01268 ATGACGACGAAGAAGAAGATAGGAGAGAATGATGAAATATTCGCTTCTTGTTCTTTCACCAGTCTGGGACTTCAGGCCACCTTATGTGATCAGCTCCGAGAAAGGATGGGCTTCGAAGTTCCGACGCACGTCCAGGCTCAAGCGATTCCGGTTATTCTCTCTGGGAGACATGTACTTGTTAATGCGGCTACCGGTACTGGCAAGACTATTGCCTATCTAGCTCCAATAATTCATCACCTGCAGATGTATGATCCTCGAATTGGACGGTTGGATGGAACTTTTGCGTTGGTGCTTGTACCAACGCGTGAGTTATGTATGCAGGTTTATGAAATATTGCAAAAGTTACTGCATCGTTTCCACTGGATTGTCCCGGGTTATGTAATGGGTGGAGAGAACAGGTCAAAGGAGAAAGCCAGGTTGCGCAAAGGAATATCTGTTCTTGTTGCAACTCCTGGACGTCTTTTGGATCACTTAAAGAATACAACATCGTTCTTGCACACGAACTTGCGTTGGATAATCTTTGATGAGGCAGATAGGATTCTGGAGTTGGGATTTGGTAAAGAAATAGAGGAGATACTTGATCTTCTGGGTTCAAGGCAAAATGGGTCTGTTAGCAAGGAGAATGCAGTCTCGAGGCATTCTCAATCCCAAAGGCAGAACTTGTTATTATCAGCAACTTTAAATGAAAAAGTAAATCATCTGGCTAACATTAGTTTAGAAAACCCAGTTATGATTGGTCTTGATGAGAAGAAGATTTCTGCTGAGCTACCAAAACCATCAAGGAAATATTTTGGGTCTGTAGGATCTGACGTGGATGATGAATCAGAATACCCAAGTCAACTACCAGCCCGTTCAGATGCAGATTATAACCTTCCAGCTCAATTAGTTCAGAAATACGTGAAAGTGCCCTGTGGTTCACGGCTAGTGGTACTTCTTTCCATTCTTAAAAATCTTTTTGAAGGAGAAGTTTCCCAAAAGATTGTGGTGTTCTTCTCAACATGTGATGCTGTAGATTTCCACTATTCCCTCTTCAGTGAATTTCAATGGCCTTCTAATTTGCAACCACAAAATCACCACAAGCAGACGTTTGTCAATTGCAAAACTTTCCGCTTACATGGAAACATGGAACAAGAGGGCCGGAGGACCTCATTTCAGGGATTTAAAGCAGAGAAATCGGCTCTTCTCTTATGCACAGATGTTGCTGCAAGAGGCTTAGATATTCCAAAAGTTAGATGTATCATTCAGTACGATTCTCCAGGAGAGGCTAGCGAATATGTGCACAGAGTTGGAAGAACTGCTCGGATAGGGGAGAAAGGAGATGCCTTGTTATTCCTACAACCAGTTGAAATTGATTATTTGCAAGACCTACAGAAGCATGGTGTATTGTTGAAGGAGTACCCCCTTGTCAAAGTCTTGGACAGTTTTCCCTTGCATGGTCAGAAGCATCATATCAAGAAGTTTGTTTCCTGTGAGATGCATCCGTGGGTGTTATCTCTGCAGAAAGCACTTGAATCCTTCATATCGGTAGAGCCAAAGATGAAGACGCTGGCCAAGGACGCATTTTGTTCTTGGGCCCGTGCTTACACGGCACACCGCGGTGAGCTAAAAAAGATTTTTATGGTGAAAAAACTTCACTTAGGGCATGTGGCAAAGAGTTTTGGACTCAAAGATCAACCCTCTTTGGTTGGGCGATCATTCCAAATGCAAACGAAAAAGAGGAAGAGGGAGCAGAAACAAAAAGGGCTGTCGAAAAGGAGAAAGGTTGCCATTAAAACATGA 1779 0.4306 MTTKKKIGENDEIFASCSFTSLGLQATLCDQLRERMGFEVPTHVQAQAIPVILSGRHVLVNAATGTGKTIAYLAPIIHHLQMYDPRIGRLDGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISVLVATPGRLLDHLKNTTSFLHTNLRWIIFDEADRILELGFGKEIEEILDLLGSRQNGSVSKENAVSRHSQSQRQNLLLSATLNEKVNHLANISLENPVMIGLDEKKISAELPKPSRKYFGSVGSDVDDESEYPSQLPARSDADYNLPAQLVQKYVKVPCGSRLVVLLSILKNLFEGEVSQKIVVFFSTCDAVDFHYSLFSEFQWPSNLQPQNHHKQTFVNCKTFRLHGNMEQEGRRTSFQGFKAEKSALLLCTDVAARGLDIPKVRCIIQYDSPGEASEYVHRVGRTARIGEKGDALLFLQPVEIDYLQDLQKHGVLLKEYPLVKVLDSFPLHGQKHHIKKFVSCEMHPWVLSLQKALESFISVEPKMKTLAKDAFCSWARAYTAHRGELKKIFMVKKLHLGHVAKSFGLKDQPSLVGRSFQMQTKKRKREQKQKGLSKRRKVAIKT* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01268 592 SMART helicmild6 355 436 IPR001650 -
Eupl10g01268 592 Pfam DEAD/DEAH box helicase 42 233 IPR011545 GO:0003676|GO:0005524
Eupl10g01268 592 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 173 181 IPR000629 -
Eupl10g01268 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 17 46 IPR014014 GO:0003724
Eupl10g01268 592 SMART ultradead3 37 264 IPR014001 -
Eupl10g01268 592 CDD SF2_C_DEAD 295 445 - -
Eupl10g01268 592 PANTHER RNA HELICASE 16 567 - -
Eupl10g01268 592 MobiDBLite consensus disorder prediction 571 592 - -
Eupl10g01268 592 CDD DEADc_DDX31 28 246 - -
Eupl10g01268 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 245 IPR014001 -
Eupl10g01268 592 SMART DUF4217_3 498 563 IPR025313 -
Eupl10g01268 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 472 IPR027417 -
Eupl10g01268 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 483 IPR001650 -
Eupl10g01268 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 245 IPR027417 -
Eupl10g01268 592 MobiDBLite consensus disorder prediction 567 592 - -
Eupl10g01268 592 Gene3D - 2 248 IPR027417 -
Eupl10g01268 592 Pfam Domain of unknown function (DUF4217) 500 560 IPR025313 -
Eupl10g01268 592 Gene3D - 301 588 IPR027417 -
Eupl10g01268 592 Pfam Helicase conserved C-terminal domain 313 436 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01268 Eupl-Chr10 32840018 32845331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01268 18 467 Eukaryotic Initiation Factors Gene Family AT1G72730 25.277 1.63e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01268 K14806 - vvi:100250946 931.398