Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01267 ATGAAGGCTCCATCAAACGGGTTTCCGGCAAATTCAGGAGAAGGAGATAGGAGCATCAATTCAGAGTTATGGCATGCTTGTGCGGGACCGCTGGTCTCTCTGCCTCCAGTTGGTAGTCTTGTGATCTACTTCCCACAAGGTCACAGCGAACAGGTTGCAGCTTCAATGCAAAAGGATACTGATAGCATCCCAAGCTATCCTAATCTTCCATCAAAGTTGATTTGTGTGCTTCATAATGTCACTTTACACGCTGATGCTGAAACTGATGAGGTTTATGCACAGATGACTCTTCAACCTGCAAATAAATGTGATAAGGAAGCATTACTGGCATCTGATATGGGCCTGAAGCAAAGCAAGCAACCCGCTGAGTTCTTCTGCAAGACACTTACGGCTAGTGACACGAGCACTCATGGTGGATTTTCTGTACCTCGTCGAGCAGCCGAGAAGATCTTTCCACCTCTAGATTTTAACATGCAACCCCCAGCTCAAGAGCTAGTAGCTAGAGACTTGCATGATGTTGCATGGACATTCAGACACATCTTTCGTGGTCAACCAAAAAGGCACCTGCTGACGACAGGTTGGAGCGTGTTTGTTAGCACGAAAAGGCTCTTTGCTAGCGATTCAGTTCTTTTTATAAGAGATGAGAAATCACAGCTTCTCTTAGGAATAAGACGTGCTAATAGACAGCAATCAGCACTTTCTTCATCAGTCATATCCAGTGATAGCATGCATATTGGAATTCTTGCTGCTGCTGCTCATGCTGCCGCAAACAACAGCCCATTTACGATATTTTACAACCCAAGGGCCAGCCCTTCAGAGTTCGTGATTCCCTTAGCCAAGTATAACAAAGCAATGTACACCCAAGTTTCCCCAGGCATGCGATTTAGGATGATGTTCGAGACTGAGGAGTCAGGGGTACGCAGGTACATGGGCACAATCACAGGTATCAGTGATCTGGATCCAGTGCGATGGAAAAATTCGCAGTGGCGCAATCTGCAGGTTGGGTGGGATGAATCAACAGCTGGTGTAAGGCCAAGCCGAGTTTCAATTTGGGAGATTGAGCCTGTTGCAACTCCTTTCTATATATGTCCACCCCCATTATTCAGACCCAAGTTCCCAAAACAACCAGGGATGCCAGATGATGAGTCCGACATGGAGAATGCTTTTAAGAGGGCAATGCCCTGGCTTGGAGATGACCTTGGCATCAAGGATGCTCAAAGTCCAATCTTCCCGGGCTTGAGTCTGGTCCAGTGGATGAGCATGCAACAGAACCCTCATTTCTCAGCTGCTCAGACAGGATTTTTCCCATCCATGGTTTCCTCAGCTTCCTTGCATAATAACCTCAGCACTGATGACCCATGCAAGATACTGAACTTTCAATCCCATGCTTTACCTGCGCCGAATTTCCAGTTAAACATTCCCAAAACAAATCAACAAAACCAAGTGGACCAGTTTCAGCAAACAACTCTCACATGGCCCCAGCAGCAGCGGCAGACTCCTATTAATCCACAACAGCAGCAACAACAAAAGCAACCGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACTGCAACTGCAACAGCAACAGCAACAGCAACAGCAACTGCAACTGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCTGCAGCAGCAGCAACAACAGACACATCAGCAACAACAACAACAGCTGCTGCTGCAGCAGCAGCAGCAACAACAGACACATCAGCAACAGCAACAGCAGCAGCAGCAGCAACAACAACAAAAACAACAACAACAGCTACTGCGACCAGCGCTTATTAATAATGGTGTAGTTGCTCCAACCCAGACTCCTAACCAAAATTTGCATCAACCAATCACCTACTCTCAGCTTCAGCAAAAGCAGTTACTCACACCCAACAACCAATTCCAACAAAATCTCCATTCCCCCAACCAGAATCCCCTCCAAGCGGCATCTTTACCACAAGACTTGCAGTTCCAGCGACAACTGGAACAGCAACAGAGTCTCTCACAAAGGCAGCAGCAGCAGCAGCCACAGATGCAACAGTTGCCACTATCCCATCATCAACTTCAGCTACAGTTGCTGCAGAAGTTGCAGCAACAGCAACAGCAAGAGTTGCTCTCCCAGGTTAGCCCACGTTTGCAACCTCAGCTGCCACAACAACAGCAGGTTCATCAACAAAACCAGCAATTTCAACAACAGCAGCCTTTGCAGCAGCAGCAGCAACAACAACTTAGCACCACCACAAACTTCTCTCCATCTCCCCTAAACCAACCACAACAGTTCCACACGAACCATATCCTGAGCCAGCAAAATCCACCTGTGCCCATCAGAACTCATTCTGGTCTCACCGATGGAGATGCGCCATCATGTTCGACCTCGCCTTCTACTAATAACTGCCAGGTTTCTCCGTCGAGCTTCTTGAACAGAACCCATCAAGCCCCGGCTATATTTGTGGATGATACGGTGGTTCAACCTGCAAGTAATTTGGTTCAAGAGCTTCAAAGCAAATCTGATGTTCGGATCAAACATGAATTGCCCAATTCAAAAGAACCTGACCAACTTGTATATAGAGGTGCCATTACAGATCCACTGGAAGCATCCTCATCCGCAACCTCATATTGTTTGGATGGTGGTGGCCTCCAGCAAAATTTCTCACTGTCTAACTTTTGTTTAGACGGGGAAGTGCAAGCAGATCCTCGGAATAATCTTCTCTTTGGAGTTAATATTGATGGTTTGACACCAGATACTTTGTTGTCAAGGGGGTTTGGTTCTGGGAAGGATCTTCAAAACTTGCTTTCTACTTATGGTGGTACTCCGAGAGATATTGAGACGGAGTTATCTACTGCAGCAATCAGTTCTCAGTCGTTTGGAGTGCCCGAAATGTCATTCAAGCCCGGTTGTTCTACTGATGCAGCCATCAACGAGAATGCAGTTTTGAATAGGGGCTTGTGGGCTAACCAGACGCCTCAGCGTATGCGGACATTCACGAAGGTTCATAAGCGAGGCTCTGTGGGAAGATCTATAGATGTGACCCGTTACAAGGGGTATGACGAGCTCAGGCAAGATCTGGCTCGCATGTTTGGAATTGAAGGGCAACTAGAAGATCCACACAGAACTGAATGGAAACTGGTTTATGTTGATCATGAAAATGACATTCTACTTGTGGGAGATGACCCCTGGGAGGAGTTTGTAAGTTGTGTCCAGAGCATCAAGATATTGTCGTCTGCTGAAGTTCAGCAGATGAGTTTGGATGGGGATCTAGGAAATGTGCAATTACAGAATCAGGCTTGCAGTGGTTCTGGTAGTGGGAATGGCTGGAAGGGACAGTATGATGACAATTCAGCTGCATCTCTTTGA 3405 0.4681 MKAPSNGFPANSGEGDRSINSELWHACAGPLVSLPPVGSLVIYFPQGHSEQVAASMQKDTDSIPSYPNLPSKLICVLHNVTLHADAETDEVYAQMTLQPANKCDKEALLASDMGLKQSKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFNMQPPAQELVARDLHDVAWTFRHIFRGQPKRHLLTTGWSVFVSTKRLFASDSVLFIRDEKSQLLLGIRRANRQQSALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSPGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGVRPSRVSIWEIEPVATPFYICPPPLFRPKFPKQPGMPDDESDMENAFKRAMPWLGDDLGIKDAQSPIFPGLSLVQWMSMQQNPHFSAAQTGFFPSMVSSASLHNNLSTDDPCKILNFQSHALPAPNFQLNIPKTNQQNQVDQFQQTTLTWPQQQRQTPINPQQQQQQKQPQQQQQQQQQQQQQQQQQQQQLQLQQQQQQQQQLQLQQQQQQQQQQQQQQQQLQQQQQQTHQQQQQQLLLQQQQQQQTHQQQQQQQQQQQQQKQQQQLLRPALINNGVVAPTQTPNQNLHQPITYSQLQQKQLLTPNNQFQQNLHSPNQNPLQAASLPQDLQFQRQLEQQQSLSQRQQQQQPQMQQLPLSHHQLQLQLLQKLQQQQQQELLSQVSPRLQPQLPQQQQVHQQNQQFQQQQPLQQQQQQQLSTTTNFSPSPLNQPQQFHTNHILSQQNPPVPIRTHSGLTDGDAPSCSTSPSTNNCQVSPSSFLNRTHQAPAIFVDDTVVQPASNLVQELQSKSDVRIKHELPNSKEPDQLVYRGAITDPLEASSSATSYCLDGGGLQQNFSLSNFCLDGEVQADPRNNLLFGVNIDGLTPDTLLSRGFGSGKDLQNLLSTYGGTPRDIETELSTAAISSQSFGVPEMSFKPGCSTDAAINENAVLNRGLWANQTPQRMRTFTKVHKRGSVGRSIDVTRYKGYDELRQDLARMFGIEGQLEDPHRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVQLQNQACSGSGSGNGWKGQYDDNSAASL* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01267 1134 Pfam AUX/IAA family 1006 1095 IPR033389 -
Eupl10g01267 1134 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 676 699 - -
Eupl10g01267 1134 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Eupl10g01267 1134 FunFam Auxin response factor 1004 1098 - -
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 1114 1134 - -
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 732 821 - -
Eupl10g01267 1134 ProSiteProfiles PB1 domain profile. 1009 1102 IPR000270 GO:0005515
Eupl10g01267 1134 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Eupl10g01267 1134 CDD B3_DNA 124 225 IPR003340 GO:0003677
Eupl10g01267 1134 Coils Coil 516 577 - -
Eupl10g01267 1134 Gene3D - 1004 1098 - -
Eupl10g01267 1134 Gene3D - 288 359 - -
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 492 512 - -
Eupl10g01267 1134 Coils Coil 581 610 - -
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 732 793 - -
Eupl10g01267 1134 Gene3D - 123 226 IPR015300 -
Eupl10g01267 1134 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1098 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl10g01267 1134 SUPERFAMILY CAD & PB1 domains 1024 1087 - -
Eupl10g01267 1134 MobiDBLite consensus disorder prediction 800 821 - -
Eupl10g01267 1134 FunFam Auxin response factor 288 360 - -
Eupl10g01267 1134 SMART B3_2 125 227 IPR003340 GO:0003677
Eupl10g01267 1134 FunFam Auxin response factor 123 227 - -
Eupl10g01267 1134 SUPERFAMILY DNA-binding pseudobarrel domain 115 254 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01267 Eupl-Chr10 32805539 32818588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01267 1 476 B3 DNA Binding Superfamily AT1G19220 81.761 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl10g01267 AUX_IAA 9.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01267 K14486 - nnu:104600495 888.256