Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl10g01259 | ATGCAGCAGCAGAGGCTCAAGCAGCAGCAACATGCCTTGATGCAACAAGCTCTCCTTCAGCAGCAGCAGCAGCAGCAGCAATCTCTCTATCATCCTGGCCTGTTAGCTCCTCCACAGATAGAGCCGATTCCAAGCGGAAATCTGCCTCCTGGGTTTGATTCGAGTACATGCCGTAGTGTTTATGTGGGGAACATTCATAATCAGGTTACCGAACCACTTCTTCAAGAGGTTTTCTCGAGTACTGGTCCCCTCGAAGGATGCAAGCTCATTAGGAAAGACAAGTCATCCTATGGTTTTATTGATTACTTTGATCGCAGATCAGCTGCACTTGCTATTTTGTCTCTTAATGGGAGGCATCTGTTTGGGCAGCCAATTAAAGTTAATTGGGCTTATGCCAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATTTTTGTTGGCGATCTTAGCCCTGAGGTTACAGATGCTACCTTGTTTGCATGCTTCTCTGTTTATCCCACTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGAGGGTTTGGGTTTGTTTCTTTTAGGACTCAACAGGATGCCCAAAGTGCGATAAATGATTTAACTGGAAAGTGGCTTGGTAGTAGACAGATACGATGTAACTGGGCAGCAAAAGGTGCAGGTGCCAATGATGATAAGCTAAACTCAGATGCCAAAAGTTTGGTGGAGTTGACAAATGGAACATCAGAAGATGGTCAAGAAATGGTAAACGATGATGCTCCAGAGAATAACCCTCAATATACTACTGTTTATGTGGGCAACCTTGCTCCTGAGGTTACCCAGCTTGATCTCCACCGGCATTTCCATGCCTTTGGTGCTGGAGTAATTGAAGAAGTTCGGGTGCAACGAGATAAAGGCTTTGGTTTTGTGAGATACAGTACTCATGCAGAAGCAGCTCTGGCTATTCAGATTGGCAATGCTCACATTCTCTGTGGCAAGCCAATTAAGTGCTCATGGGGTAGCAAACCTACTCCCCCCGGGATGAGCTCCACCCCTCTCCCTCCTCCTGCTGCTGGGCCCTTTCCAGGTCTTTCGGCCACGGACCTCTTGGCTTATGAGCGACAGCTGGCAATGAGCAAGATGGGAGGGGCCCAGGCCCTCATGCACCCCCAGGGTCAACATGCTTTCAAGCAGGGAGCCATGGGAGTAGGTGCAGCTGGAGCAAGCCAGGCTATCTATGATGGTGGGTTCCAGAATGTTGCGGCAGCCCAGCAGCTTATGTACTATCAGTAA | 1281 | 0.4848 | MQQQRLKQQQHALMQQALLQQQQQQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNIHNQVTEPLLQEVFSSTGPLEGCKLIRKDKSSYGFIDYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRTQQDAQSAINDLTGKWLGSRQIRCNWAAKGAGANDDKLNSDAKSLVELTNGTSEDGQEMVNDDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHAFGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQIGNAHILCGKPIKCSWGSKPTPPGMSSTPLPPPAAGPFPGLSATDLLAYERQLAMSKMGGAQALMHPQGQHAFKQGAMGVGAAGASQAIYDGGFQNVAAAQQLMYYQ* | 427 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl10g01259 | 426 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 141 | 236 | - | - | |
Eupl10g01259 | 426 | SUPERFAMILY | RNA-binding domain, RBD | 42 | 136 | IPR035979 | GO:0003676 | |
Eupl10g01259 | 426 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 251 | 338 | - | - | |
Eupl10g01259 | 426 | SUPERFAMILY | RNA-binding domain, RBD | 256 | 345 | IPR035979 | GO:0003676 | |
Eupl10g01259 | 426 | Gene3D | - | 142 | 221 | IPR012677 | - | |
Eupl10g01259 | 426 | CDD | RRM1_PUB1 | 60 | 130 | - | - | |
Eupl10g01259 | 426 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 143 | 221 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | Gene3D | - | 240 | 342 | IPR012677 | - | |
Eupl10g01259 | 426 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 338 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 58 | 132 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | CDD | RRM2_PUB1 | 142 | 221 | - | - | |
Eupl10g01259 | 426 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 332 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 145 | 215 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 60 | 126 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | SMART | rrm1_1 | 144 | 217 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | SMART | rrm1_1 | 59 | 128 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | SMART | rrm1_1 | 265 | 334 | IPR000504 | GO:0003723 | |
Eupl10g01259 | 426 | CDD | RRM3_PUB1 | 264 | 339 | - | - | |
Eupl10g01259 | 426 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 1 | 140 | - | - | |
Eupl10g01259 | 426 | SUPERFAMILY | RNA-binding domain, RBD | 137 | 222 | IPR035979 | GO:0003676 | |
Eupl10g01259 | 426 | FunFam | Oligouridylate-binding protein 1C | 241 | 342 | - | - | |
Eupl10g01259 | 426 | Gene3D | - | 1 | 141 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl10g01259 | Eupl-Chr10 | 32721724 | 32731443 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl10g01259 | 54 | 332 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 27.703 | 1.23e-20 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl10g01259 | K13201 | - | nnu:104600504 | 735.717 |