Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01259 ATGCAGCAGCAGAGGCTCAAGCAGCAGCAACATGCCTTGATGCAACAAGCTCTCCTTCAGCAGCAGCAGCAGCAGCAGCAATCTCTCTATCATCCTGGCCTGTTAGCTCCTCCACAGATAGAGCCGATTCCAAGCGGAAATCTGCCTCCTGGGTTTGATTCGAGTACATGCCGTAGTGTTTATGTGGGGAACATTCATAATCAGGTTACCGAACCACTTCTTCAAGAGGTTTTCTCGAGTACTGGTCCCCTCGAAGGATGCAAGCTCATTAGGAAAGACAAGTCATCCTATGGTTTTATTGATTACTTTGATCGCAGATCAGCTGCACTTGCTATTTTGTCTCTTAATGGGAGGCATCTGTTTGGGCAGCCAATTAAAGTTAATTGGGCTTATGCCAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATTTTTGTTGGCGATCTTAGCCCTGAGGTTACAGATGCTACCTTGTTTGCATGCTTCTCTGTTTATCCCACTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGAGGGTTTGGGTTTGTTTCTTTTAGGACTCAACAGGATGCCCAAAGTGCGATAAATGATTTAACTGGAAAGTGGCTTGGTAGTAGACAGATACGATGTAACTGGGCAGCAAAAGGTGCAGGTGCCAATGATGATAAGCTAAACTCAGATGCCAAAAGTTTGGTGGAGTTGACAAATGGAACATCAGAAGATGGTCAAGAAATGGTAAACGATGATGCTCCAGAGAATAACCCTCAATATACTACTGTTTATGTGGGCAACCTTGCTCCTGAGGTTACCCAGCTTGATCTCCACCGGCATTTCCATGCCTTTGGTGCTGGAGTAATTGAAGAAGTTCGGGTGCAACGAGATAAAGGCTTTGGTTTTGTGAGATACAGTACTCATGCAGAAGCAGCTCTGGCTATTCAGATTGGCAATGCTCACATTCTCTGTGGCAAGCCAATTAAGTGCTCATGGGGTAGCAAACCTACTCCCCCCGGGATGAGCTCCACCCCTCTCCCTCCTCCTGCTGCTGGGCCCTTTCCAGGTCTTTCGGCCACGGACCTCTTGGCTTATGAGCGACAGCTGGCAATGAGCAAGATGGGAGGGGCCCAGGCCCTCATGCACCCCCAGGGTCAACATGCTTTCAAGCAGGGAGCCATGGGAGTAGGTGCAGCTGGAGCAAGCCAGGCTATCTATGATGGTGGGTTCCAGAATGTTGCGGCAGCCCAGCAGCTTATGTACTATCAGTAA 1281 0.4848 MQQQRLKQQQHALMQQALLQQQQQQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNIHNQVTEPLLQEVFSSTGPLEGCKLIRKDKSSYGFIDYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRTQQDAQSAINDLTGKWLGSRQIRCNWAAKGAGANDDKLNSDAKSLVELTNGTSEDGQEMVNDDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHAFGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQIGNAHILCGKPIKCSWGSKPTPPGMSSTPLPPPAAGPFPGLSATDLLAYERQLAMSKMGGAQALMHPQGQHAFKQGAMGVGAAGASQAIYDGGFQNVAAAQQLMYYQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01259 426 FunFam oligouridylate-binding protein 1-like isoform X2 141 236 - -
Eupl10g01259 426 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Eupl10g01259 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 251 338 - -
Eupl10g01259 426 SUPERFAMILY RNA-binding domain, RBD 256 345 IPR035979 GO:0003676
Eupl10g01259 426 Gene3D - 142 221 IPR012677 -
Eupl10g01259 426 CDD RRM1_PUB1 60 130 - -
Eupl10g01259 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Eupl10g01259 426 Gene3D - 240 342 IPR012677 -
Eupl10g01259 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 338 IPR000504 GO:0003723
Eupl10g01259 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Eupl10g01259 426 CDD RRM2_PUB1 142 221 - -
Eupl10g01259 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 332 IPR000504 GO:0003723
Eupl10g01259 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Eupl10g01259 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Eupl10g01259 426 SMART rrm1_1 144 217 IPR000504 GO:0003723
Eupl10g01259 426 SMART rrm1_1 59 128 IPR000504 GO:0003723
Eupl10g01259 426 SMART rrm1_1 265 334 IPR000504 GO:0003723
Eupl10g01259 426 CDD RRM3_PUB1 264 339 - -
Eupl10g01259 426 FunFam oligouridylate-binding protein 1B-like isoform X2 1 140 - -
Eupl10g01259 426 SUPERFAMILY RNA-binding domain, RBD 137 222 IPR035979 GO:0003676
Eupl10g01259 426 FunFam Oligouridylate-binding protein 1C 241 342 - -
Eupl10g01259 426 Gene3D - 1 141 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01259 Eupl-Chr10 32721724 32731443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01259 54 332 Eukaryotic Initiation Factors Gene Family AT3G16380 27.703 1.23e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01259 K13201 - nnu:104600504 735.717